miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 3' -54.5 NC_002512.2 + 103346 0.7 0.896402
Target:  5'- gGgGCGUCGACgagUCcgGGGCCGcGGUCg -3'
miRNA:   3'- gCgUGUAGCUGg--AGuaCCUGGC-CUAG- -5'
8969 3' -54.5 NC_002512.2 + 34066 0.7 0.896402
Target:  5'- uCGaCGgGUUGACCgagaAUGGACCGGcgCg -3'
miRNA:   3'- -GC-GUgUAGCUGGag--UACCUGGCCuaG- -5'
8969 3' -54.5 NC_002512.2 + 95704 0.69 0.90269
Target:  5'- cCGCACGUCGccgaagaacGCCgccagGGuCCGGGUCg -3'
miRNA:   3'- -GCGUGUAGC---------UGGagua-CCuGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 30682 0.69 0.906356
Target:  5'- gCGCGgucggacgacaaccCGUaCGACCUCAUGGAggccgucgaggacCUGGAUCu -3'
miRNA:   3'- -GCGU--------------GUA-GCUGGAGUACCU-------------GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 182283 0.69 0.908754
Target:  5'- uGCACGUCcguccgcucccuGGCCgUCAgGGACCGGGa- -3'
miRNA:   3'- gCGUGUAG------------CUGG-AGUaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 184735 0.69 0.908754
Target:  5'- gCGCGCAUCGACgaCGUgaGGAUCGGc-- -3'
miRNA:   3'- -GCGUGUAGCUGgaGUA--CCUGGCCuag -5'
8969 3' -54.5 NC_002512.2 + 99102 0.69 0.919652
Target:  5'- uGCGCGUCGGcggcccuCCUCGUGGuCCGcgccgcggcGAUCu -3'
miRNA:   3'- gCGUGUAGCU-------GGAGUACCuGGC---------CUAG- -5'
8969 3' -54.5 NC_002512.2 + 195370 0.69 0.920203
Target:  5'- uGCugGUCGGCUgCcUGGucaccuGCCGGGUCg -3'
miRNA:   3'- gCGugUAGCUGGaGuACC------UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 184042 0.68 0.930737
Target:  5'- cCGCugGUCGAgUUCGUGugaGACCGcGUCg -3'
miRNA:   3'- -GCGugUAGCUgGAGUAC---CUGGCcUAG- -5'
8969 3' -54.5 NC_002512.2 + 113646 0.68 0.930737
Target:  5'- uGCAgGgUGGCCUCGUGGuucuCCGGGg- -3'
miRNA:   3'- gCGUgUaGCUGGAGUACCu---GGCCUag -5'
8969 3' -54.5 NC_002512.2 + 224910 0.68 0.930737
Target:  5'- uCGC-CGUCuGcACCUCcgucgcggGGACCGGGUCc -3'
miRNA:   3'- -GCGuGUAG-C-UGGAGua------CCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 85281 0.68 0.940356
Target:  5'- aGCGCGgcgCgGACCUCGUGcGAggGGAUCg -3'
miRNA:   3'- gCGUGUa--G-CUGGAGUAC-CUggCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 206795 0.68 0.940356
Target:  5'- cCGCACGcCGAaCUCcgGGAuCCGGAa- -3'
miRNA:   3'- -GCGUGUaGCUgGAGuaCCU-GGCCUag -5'
8969 3' -54.5 NC_002512.2 + 203120 0.68 0.940356
Target:  5'- aGgGCGUCGGCCgagUCGUGGGCC--AUCa -3'
miRNA:   3'- gCgUGUAGCUGG---AGUACCUGGccUAG- -5'
8969 3' -54.5 NC_002512.2 + 62748 0.68 0.940356
Target:  5'- gGCACGcCGACCUCGgaGACCaGGAacUCg -3'
miRNA:   3'- gCGUGUaGCUGGAGUacCUGG-CCU--AG- -5'
8969 3' -54.5 NC_002512.2 + 216043 0.68 0.944824
Target:  5'- gCGCGCGagugCGACgggcgUUcgGGGCCGGGUCc -3'
miRNA:   3'- -GCGUGUa---GCUGg----AGuaCCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 215327 0.68 0.944824
Target:  5'- gGCAC--CGGCUUCcucGACCGGAUCg -3'
miRNA:   3'- gCGUGuaGCUGGAGuacCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 94644 0.68 0.949067
Target:  5'- gGCGCGgacgaCGGCCUCGaggcggcccgGGGCCGGGg- -3'
miRNA:   3'- gCGUGUa----GCUGGAGUa---------CCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 187099 0.68 0.949067
Target:  5'- gGC-CGUCGACCgacagcccuaCGUGGACCaGGggCa -3'
miRNA:   3'- gCGuGUAGCUGGa---------GUACCUGG-CCuaG- -5'
8969 3' -54.5 NC_002512.2 + 211817 0.68 0.949067
Target:  5'- gCGCACcuauuUCGACUUCcUGGAccCCGGGcUCu -3'
miRNA:   3'- -GCGUGu----AGCUGGAGuACCU--GGCCU-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.