miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 3' -54.5 NC_002512.2 + 81829 0.75 0.612551
Target:  5'- gGCGCGUcCGAUCUgccGGACCGGGUCg -3'
miRNA:   3'- gCGUGUA-GCUGGAguaCCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 82072 0.71 0.852641
Target:  5'- gCGCGCGUCcgucgcguccuCCUCccGGAuCCGGAUCa -3'
miRNA:   3'- -GCGUGUAGcu---------GGAGuaCCU-GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 83814 0.67 0.956888
Target:  5'- gCGCGCcggCGGCggcggCUCcgGGcCCGGGUCg -3'
miRNA:   3'- -GCGUGua-GCUG-----GAGuaCCuGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 84942 0.71 0.861726
Target:  5'- uCGCGCAUCguGACgUgGguggGGAUCGGGUCg -3'
miRNA:   3'- -GCGUGUAG--CUGgAgUa---CCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 85186 0.67 0.963847
Target:  5'- gGCGCGaCGGguCCcCGUGGgucGCCGGGUCg -3'
miRNA:   3'- gCGUGUaGCU--GGaGUACC---UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 85281 0.68 0.940356
Target:  5'- aGCGCGgcgCgGACCUCGUGcGAggGGAUCg -3'
miRNA:   3'- gCGUGUa--G-CUGGAGUAC-CUggCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 86074 0.67 0.963847
Target:  5'- gGCuCAUCGAC---AUGGACCGGGa- -3'
miRNA:   3'- gCGuGUAGCUGgagUACCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 89601 0.66 0.982003
Target:  5'- aGC-CGggUGGCCUCcaugacGUGGGCCGGAc- -3'
miRNA:   3'- gCGuGUa-GCUGGAG------UACCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 89723 0.66 0.972751
Target:  5'- gGCGgGU-GACCUUG-GGACCGGAggUCg -3'
miRNA:   3'- gCGUgUAgCUGGAGUaCCUGGCCU--AG- -5'
8969 3' -54.5 NC_002512.2 + 91207 0.67 0.968225
Target:  5'- gCGCACGcCGgcgacgacagguacuGCCgauaCGUGGAUUGGAUCg -3'
miRNA:   3'- -GCGUGUaGC---------------UGGa---GUACCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 94563 0.67 0.963847
Target:  5'- gGCGCGgcugacgcCGACCUCggGGaccGCCGGAc- -3'
miRNA:   3'- gCGUGUa-------GCUGGAGuaCC---UGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 94644 0.68 0.949067
Target:  5'- gGCGCGgacgaCGGCCUCGaggcggcccgGGGCCGGGg- -3'
miRNA:   3'- gCGUGUa----GCUGGAGUa---------CCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 95680 0.67 0.958348
Target:  5'- gCGCGCGUCcgccgGGCCUCcggcggggacgggGGGCCGGGa- -3'
miRNA:   3'- -GCGUGUAG-----CUGGAGua-----------CCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 95704 0.69 0.90269
Target:  5'- cCGCACGUCGccgaagaacGCCgccagGGuCCGGGUCg -3'
miRNA:   3'- -GCGUGUAGC---------UGGagua-CCuGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 96480 0.66 0.983893
Target:  5'- cCGCGCGgccgucUCGcCCUcCAUGGuCCGGGc- -3'
miRNA:   3'- -GCGUGU------AGCuGGA-GUACCuGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 97715 0.71 0.861726
Target:  5'- uGUGCAUCGGCUUCAcgaucauCCGGAUCg -3'
miRNA:   3'- gCGUGUAGCUGGAGUaccu---GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 99102 0.69 0.919652
Target:  5'- uGCGCGUCGGcggcccuCCUCGUGGuCCGcgccgcggcGAUCu -3'
miRNA:   3'- gCGUGUAGCU-------GGAGUACCuGGC---------CUAG- -5'
8969 3' -54.5 NC_002512.2 + 102060 0.66 0.975332
Target:  5'- cCGC-CGaCGACCUCccGGAgCCGGGa- -3'
miRNA:   3'- -GCGuGUaGCUGGAGuaCCU-GGCCUag -5'
8969 3' -54.5 NC_002512.2 + 103346 0.7 0.896402
Target:  5'- gGgGCGUCGACgagUCcgGGGCCGcGGUCg -3'
miRNA:   3'- gCgUGUAGCUGg--AGuaCCUGGC-CUAG- -5'
8969 3' -54.5 NC_002512.2 + 104804 0.68 0.953087
Target:  5'- aGCACgAUCaACCUCGacaGGGCgGGGUCc -3'
miRNA:   3'- gCGUG-UAGcUGGAGUa--CCUGgCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.