miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 3' -54.5 NC_002512.2 + 2477 0.67 0.971112
Target:  5'- gCGCGCGagaguagguccgggCGGCCUUggGGAaCGGAUCu -3'
miRNA:   3'- -GCGUGUa-------------GCUGGAGuaCCUgGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 7415 0.66 0.982003
Target:  5'- aCGUugA-CGACCgCGaGGGCCGGcgCg -3'
miRNA:   3'- -GCGugUaGCUGGaGUaCCUGGCCuaG- -5'
8969 3' -54.5 NC_002512.2 + 8903 0.7 0.866894
Target:  5'- gGCAC-UCGAcCCUCcUGGccagggcggccucgGCCGGGUCg -3'
miRNA:   3'- gCGUGuAGCU-GGAGuACC--------------UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 10532 0.66 0.972751
Target:  5'- gGCGCAg-GACCUCGcGGacGCCGGGc- -3'
miRNA:   3'- gCGUGUagCUGGAGUaCC--UGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 11582 0.67 0.956888
Target:  5'- aGCACGagCGGCCgccCA-GGGCCGGGg- -3'
miRNA:   3'- gCGUGUa-GCUGGa--GUaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 21285 0.66 0.979951
Target:  5'- aGCACGgaaccUCGACCUCGUc--CCGGAc- -3'
miRNA:   3'- gCGUGU-----AGCUGGAGUAccuGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 23115 0.67 0.969981
Target:  5'- aCGCAC-UUaACCUCGUGGACauauauGGAUg -3'
miRNA:   3'- -GCGUGuAGcUGGAGUACCUGg-----CCUAg -5'
8969 3' -54.5 NC_002512.2 + 28483 0.66 0.97773
Target:  5'- aGCGCAUCgugGACUUCggGcGACUGGAc- -3'
miRNA:   3'- gCGUGUAG---CUGGAGuaC-CUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 28600 0.71 0.861726
Target:  5'- uGCGCGUC-AUCUCgGUGGccuucaACCGGAUCa -3'
miRNA:   3'- gCGUGUAGcUGGAG-UACC------UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 30682 0.69 0.906356
Target:  5'- gCGCGgucggacgacaaccCGUaCGACCUCAUGGAggccgucgaggacCUGGAUCu -3'
miRNA:   3'- -GCGU--------------GUA-GCUGGAGUACCU-------------GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 34066 0.7 0.896402
Target:  5'- uCGaCGgGUUGACCgagaAUGGACCGGcgCg -3'
miRNA:   3'- -GC-GUgUAGCUGGag--UACCUGGCCuaG- -5'
8969 3' -54.5 NC_002512.2 + 39689 0.66 0.973806
Target:  5'- cCGCGCcgcCGACCUUcugcagccggggcgaGcGGAUCGGGUCg -3'
miRNA:   3'- -GCGUGua-GCUGGAG---------------UaCCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 41570 0.71 0.853408
Target:  5'- gCGCGCAgguucUUGACCUCGUGGAaggccacCCGGu-- -3'
miRNA:   3'- -GCGUGU-----AGCUGGAGUACCU-------GGCCuag -5'
8969 3' -54.5 NC_002512.2 + 43628 0.66 0.972751
Target:  5'- aGCugAagaaGACCUCGUgaccgaGGACCGGGa- -3'
miRNA:   3'- gCGugUag--CUGGAGUA------CCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 59283 0.72 0.778358
Target:  5'- cCGUgACGUCGugCUCGacGGACuCGGGUCg -3'
miRNA:   3'- -GCG-UGUAGCugGAGUa-CCUG-GCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 62748 0.68 0.940356
Target:  5'- gGCACGcCGACCUCGgaGACCaGGAacUCg -3'
miRNA:   3'- gCGUGUaGCUGGAGUacCUGG-CCU--AG- -5'
8969 3' -54.5 NC_002512.2 + 71578 0.66 0.983893
Target:  5'- uCGCGCcggacgaccgCGGCCUUggGGGCCGGc-- -3'
miRNA:   3'- -GCGUGua--------GCUGGAGuaCCUGGCCuag -5'
8969 3' -54.5 NC_002512.2 + 74047 0.66 0.972751
Target:  5'- gGCACcUUGAagcCCUCccgGGAgCGGAUCu -3'
miRNA:   3'- gCGUGuAGCU---GGAGua-CCUgGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 75010 0.74 0.682533
Target:  5'- aCGCGCGUCGcACCgaUCGaGGGCCGGGg- -3'
miRNA:   3'- -GCGUGUAGC-UGG--AGUaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 79674 0.67 0.963847
Target:  5'- uCGCcucccCggCGGCCUCcgGGuucCCGGAUCc -3'
miRNA:   3'- -GCGu----GuaGCUGGAGuaCCu--GGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.