miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 3' -54.5 NC_002512.2 + 225568 0.67 0.960473
Target:  5'- gGCgACGaggcCGACCUCGaggGGcGCCGGGUCu -3'
miRNA:   3'- gCG-UGUa---GCUGGAGUa--CC-UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 224910 0.68 0.930737
Target:  5'- uCGC-CGUCuGcACCUCcgucgcggGGACCGGGUCc -3'
miRNA:   3'- -GCGuGUAG-C-UGGAGua------CCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 224085 0.66 0.975332
Target:  5'- -cCACGgagGACCUCAgggGGACCGuGUCg -3'
miRNA:   3'- gcGUGUag-CUGGAGUa--CCUGGCcUAG- -5'
8969 3' -54.5 NC_002512.2 + 222405 0.71 0.822105
Target:  5'- aGCGCcgCGGCUUCGgcggGGGCCGGc-- -3'
miRNA:   3'- gCGUGuaGCUGGAGUa---CCUGGCCuag -5'
8969 3' -54.5 NC_002512.2 + 221172 0.71 0.822105
Target:  5'- gCGCGCGgccgacCGACCUCggaGUGGACgGGAc- -3'
miRNA:   3'- -GCGUGUa-----GCUGGAG---UACCUGgCCUag -5'
8969 3' -54.5 NC_002512.2 + 216043 0.68 0.944824
Target:  5'- gCGCGCGagugCGACgggcgUUcgGGGCCGGGUCc -3'
miRNA:   3'- -GCGUGUa---GCUGg----AGuaCCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 215327 0.68 0.944824
Target:  5'- gGCAC--CGGCUUCcucGACCGGAUCg -3'
miRNA:   3'- gCGUGuaGCUGGAGuacCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 213499 0.72 0.778358
Target:  5'- gCGCGCccGUCGACUUCGaGGGcgucguCCGGGUCg -3'
miRNA:   3'- -GCGUG--UAGCUGGAGUaCCU------GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 211872 0.67 0.963847
Target:  5'- aGCAuCGUCGGCgC-CcUGGAgCGGGUCa -3'
miRNA:   3'- gCGU-GUAGCUG-GaGuACCUgGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 211817 0.68 0.949067
Target:  5'- gCGCACcuauuUCGACUUCcUGGAccCCGGGcUCu -3'
miRNA:   3'- -GCGUGu----AGCUGGAGuACCU--GGCCU-AG- -5'
8969 3' -54.5 NC_002512.2 + 209178 0.67 0.956888
Target:  5'- gCGCGCAa-GAuCCUCGUGGACgaGGAg- -3'
miRNA:   3'- -GCGUGUagCU-GGAGUACCUGg-CCUag -5'
8969 3' -54.5 NC_002512.2 + 206795 0.68 0.940356
Target:  5'- cCGCACGcCGAaCUCcgGGAuCCGGAa- -3'
miRNA:   3'- -GCGUGUaGCUgGAGuaCCU-GGCCUag -5'
8969 3' -54.5 NC_002512.2 + 203969 1.09 0.006119
Target:  5'- aCGCACAUCGACCUCAUGGACCGGAUCc -3'
miRNA:   3'- -GCGUGUAGCUGGAGUACCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 203120 0.68 0.940356
Target:  5'- aGgGCGUCGGCCgagUCGUGGGCC--AUCa -3'
miRNA:   3'- gCgUGUAGCUGG---AGUACCUGGccUAG- -5'
8969 3' -54.5 NC_002512.2 + 199559 0.66 0.983711
Target:  5'- uCGCGCGUCGAUgaacagaCUCGUgcGGuACCgcGGGUCg -3'
miRNA:   3'- -GCGUGUAGCUG-------GAGUA--CC-UGG--CCUAG- -5'
8969 3' -54.5 NC_002512.2 + 197177 0.71 0.822105
Target:  5'- cCGCGCcucuUCGuCCUCAUGGACCcGcUCg -3'
miRNA:   3'- -GCGUGu---AGCuGGAGUACCUGGcCuAG- -5'
8969 3' -54.5 NC_002512.2 + 195370 0.69 0.920203
Target:  5'- uGCugGUCGGCUgCcUGGucaccuGCCGGGUCg -3'
miRNA:   3'- gCGugUAGCUGGaGuACC------UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 193658 0.66 0.972751
Target:  5'- uCGC-CGUCGuCCUCG-GGACCGucUCc -3'
miRNA:   3'- -GCGuGUAGCuGGAGUaCCUGGCcuAG- -5'
8969 3' -54.5 NC_002512.2 + 191838 0.66 0.975332
Target:  5'- gGCcCGUCG-CCUCcUGGAacucCCGGAUa -3'
miRNA:   3'- gCGuGUAGCuGGAGuACCU----GGCCUAg -5'
8969 3' -54.5 NC_002512.2 + 190740 0.68 0.950701
Target:  5'- cCGUACugaucUCGGaggccgggacgcucuUCUaCGUGGACCGGGUCa -3'
miRNA:   3'- -GCGUGu----AGCU---------------GGA-GUACCUGGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.