miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 3' -54.5 NC_002512.2 + 86074 0.67 0.963847
Target:  5'- gGCuCAUCGAC---AUGGACCGGGa- -3'
miRNA:   3'- gCGuGUAGCUGgagUACCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 30682 0.69 0.906356
Target:  5'- gCGCGgucggacgacaaccCGUaCGACCUCAUGGAggccgucgaggacCUGGAUCu -3'
miRNA:   3'- -GCGU--------------GUA-GCUGGAGUACCU-------------GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 99102 0.69 0.919652
Target:  5'- uGCGCGUCGGcggcccuCCUCGUGGuCCGcgccgcggcGAUCu -3'
miRNA:   3'- gCGUGUAGCU-------GGAGUACCuGGC---------CUAG- -5'
8969 3' -54.5 NC_002512.2 + 113646 0.68 0.930737
Target:  5'- uGCAgGgUGGCCUCGUGGuucuCCGGGg- -3'
miRNA:   3'- gCGUgUaGCUGGAGUACCu---GGCCUag -5'
8969 3' -54.5 NC_002512.2 + 62748 0.68 0.940356
Target:  5'- gGCACGcCGACCUCGgaGACCaGGAacUCg -3'
miRNA:   3'- gCGUGUaGCUGGAGUacCUGG-CCU--AG- -5'
8969 3' -54.5 NC_002512.2 + 85281 0.68 0.940356
Target:  5'- aGCGCGgcgCgGACCUCGUGcGAggGGAUCg -3'
miRNA:   3'- gCGUGUa--G-CUGGAGUAC-CUggCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 11582 0.67 0.956888
Target:  5'- aGCACGagCGGCCgccCA-GGGCCGGGg- -3'
miRNA:   3'- gCGUGUa-GCUGGa--GUaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 83814 0.67 0.956888
Target:  5'- gCGCGCcggCGGCggcggCUCcgGGcCCGGGUCg -3'
miRNA:   3'- -GCGUGua-GCUG-----GAGuaCCuGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 79674 0.67 0.963847
Target:  5'- uCGCcucccCggCGGCCUCcgGGuucCCGGAUCc -3'
miRNA:   3'- -GCGu----GuaGCUGGAGuaCCu--GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 95704 0.69 0.90269
Target:  5'- cCGCACGUCGccgaagaacGCCgccagGGuCCGGGUCg -3'
miRNA:   3'- -GCGUGUAGC---------UGGagua-CCuGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 103346 0.7 0.896402
Target:  5'- gGgGCGUCGACgagUCcgGGGCCGcGGUCg -3'
miRNA:   3'- gCgUGUAGCUGg--AGuaCCUGGC-CUAG- -5'
8969 3' -54.5 NC_002512.2 + 8903 0.7 0.866894
Target:  5'- gGCAC-UCGAcCCUCcUGGccagggcggccucgGCCGGGUCg -3'
miRNA:   3'- gCGUGuAGCU-GGAGuACC--------------UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 75010 0.74 0.682533
Target:  5'- aCGCGCGUCGcACCgaUCGaGGGCCGGGg- -3'
miRNA:   3'- -GCGUGUAGC-UGG--AGUaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 59283 0.72 0.778358
Target:  5'- cCGUgACGUCGugCUCGacGGACuCGGGUCg -3'
miRNA:   3'- -GCG-UGUAGCugGAGUa-CCUG-GCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 122829 0.71 0.822105
Target:  5'- aGCGCGUCGACCg---GGACuucuccguCGGGUCc -3'
miRNA:   3'- gCGUGUAGCUGGaguaCCUG--------GCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 148087 0.71 0.84643
Target:  5'- gGCGCGUCGGcCCUCGUGGcuagagUCGcGAUCu -3'
miRNA:   3'- gCGUGUAGCU-GGAGUACCu-----GGC-CUAG- -5'
8969 3' -54.5 NC_002512.2 + 82072 0.71 0.852641
Target:  5'- gCGCGCGUCcgucgcguccuCCUCccGGAuCCGGAUCa -3'
miRNA:   3'- -GCGUGUAGcu---------GGAGuaCCU-GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 41570 0.71 0.853408
Target:  5'- gCGCGCAgguucUUGACCUCGUGGAaggccacCCGGu-- -3'
miRNA:   3'- -GCGUGU-----AGCUGGAGUACCU-------GGCCuag -5'
8969 3' -54.5 NC_002512.2 + 84942 0.71 0.861726
Target:  5'- uCGCGCAUCguGACgUgGguggGGAUCGGGUCg -3'
miRNA:   3'- -GCGUGUAG--CUGgAgUa---CCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 28600 0.71 0.861726
Target:  5'- uGCGCGUC-AUCUCgGUGGccuucaACCGGAUCa -3'
miRNA:   3'- gCGUGUAGcUGGAG-UACC------UGGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.