miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 3' -54.5 NC_002512.2 + 203969 1.09 0.006119
Target:  5'- aCGCACAUCGACCUCAUGGACCGGAUCc -3'
miRNA:   3'- -GCGUGUAGCUGGAGUACCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 81829 0.75 0.612551
Target:  5'- gGCGCGUcCGAUCUgccGGACCGGGUCg -3'
miRNA:   3'- gCGUGUA-GCUGGAguaCCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 148627 0.75 0.622566
Target:  5'- cCGUACGUCGACCUCAaccgcaGGccGCCGGAc- -3'
miRNA:   3'- -GCGUGUAGCUGGAGUa-----CC--UGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 121036 0.75 0.65262
Target:  5'- gGCGagcgCGACCUC-UGGGCCGGGUa -3'
miRNA:   3'- gCGUgua-GCUGGAGuACCUGGCCUAg -5'
8969 3' -54.5 NC_002512.2 + 75010 0.74 0.682533
Target:  5'- aCGCGCGUCGcACCgaUCGaGGGCCGGGg- -3'
miRNA:   3'- -GCGUGUAGC-UGG--AGUaCCUGGCCUag -5'
8969 3' -54.5 NC_002512.2 + 59283 0.72 0.778358
Target:  5'- cCGUgACGUCGugCUCGacGGACuCGGGUCg -3'
miRNA:   3'- -GCG-UGUAGCugGAGUa-CCUG-GCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 213499 0.72 0.778358
Target:  5'- gCGCGCccGUCGACUUCGaGGGcgucguCCGGGUCg -3'
miRNA:   3'- -GCGUG--UAGCUGGAGUaCCU------GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 112941 0.72 0.813655
Target:  5'- gGCGCG-CGAgCC-CGcGGACCGGGUCg -3'
miRNA:   3'- gCGUGUaGCU-GGaGUaCCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 222405 0.71 0.822105
Target:  5'- aGCGCcgCGGCUUCGgcggGGGCCGGc-- -3'
miRNA:   3'- gCGUGuaGCUGGAGUa---CCUGGCCuag -5'
8969 3' -54.5 NC_002512.2 + 122829 0.71 0.822105
Target:  5'- aGCGCGUCGACCg---GGACuucuccguCGGGUCc -3'
miRNA:   3'- gCGUGUAGCUGGaguaCCUG--------GCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 197177 0.71 0.822105
Target:  5'- cCGCGCcucuUCGuCCUCAUGGACCcGcUCg -3'
miRNA:   3'- -GCGUGu---AGCuGGAGUACCUGGcCuAG- -5'
8969 3' -54.5 NC_002512.2 + 221172 0.71 0.822105
Target:  5'- gCGCGCGgccgacCGACCUCggaGUGGACgGGAc- -3'
miRNA:   3'- -GCGUGUa-----GCUGGAG---UACCUGgCCUag -5'
8969 3' -54.5 NC_002512.2 + 148087 0.71 0.84643
Target:  5'- gGCGCGUCGGcCCUCGUGGcuagagUCGcGAUCu -3'
miRNA:   3'- gCGUGUAGCU-GGAGUACCu-----GGC-CUAG- -5'
8969 3' -54.5 NC_002512.2 + 82072 0.71 0.852641
Target:  5'- gCGCGCGUCcgucgcguccuCCUCccGGAuCCGGAUCa -3'
miRNA:   3'- -GCGUGUAGcu---------GGAGuaCCU-GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 41570 0.71 0.853408
Target:  5'- gCGCGCAgguucUUGACCUCGUGGAaggccacCCGGu-- -3'
miRNA:   3'- -GCGUGU-----AGCUGGAGUACCU-------GGCCuag -5'
8969 3' -54.5 NC_002512.2 + 28600 0.71 0.861726
Target:  5'- uGCGCGUC-AUCUCgGUGGccuucaACCGGAUCa -3'
miRNA:   3'- gCGUGUAGcUGGAG-UACC------UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 84942 0.71 0.861726
Target:  5'- uCGCGCAUCguGACgUgGguggGGAUCGGGUCg -3'
miRNA:   3'- -GCGUGUAG--CUGgAgUa---CCUGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 97715 0.71 0.861726
Target:  5'- uGUGCAUCGGCUUCAcgaucauCCGGAUCg -3'
miRNA:   3'- gCGUGUAGCUGGAGUaccu---GGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 8903 0.7 0.866894
Target:  5'- gGCAC-UCGAcCCUCcUGGccagggcggccucgGCCGGGUCg -3'
miRNA:   3'- gCGUGuAGCU-GGAGuACC--------------UGGCCUAG- -5'
8969 3' -54.5 NC_002512.2 + 182459 0.7 0.889893
Target:  5'- gCGgGCGUgGugCUCGUGGcAgUGGAUCa -3'
miRNA:   3'- -GCgUGUAgCugGAGUACC-UgGCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.