miRNA display CGI


Results 21 - 40 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 5' -57.1 NC_002512.2 + 165129 0.67 0.908496
Target:  5'- aACGucauCCGCCUgUUCGGCgcuaccgCGuUGgGGa -3'
miRNA:   3'- -UGCu---GGCGGAgAAGCCGaa-----GC-ACgCC- -5'
8969 5' -57.1 NC_002512.2 + 103443 0.67 0.908496
Target:  5'- gGCGGCCGCCgccgUCgcCGGC--CGgGCGGg -3'
miRNA:   3'- -UGCUGGCGG----AGaaGCCGaaGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 99215 0.67 0.902572
Target:  5'- cGCGGCCGCCgccgugUGGg-UCGUGCGc -3'
miRNA:   3'- -UGCUGGCGGagaa--GCCgaAGCACGCc -5'
8969 5' -57.1 NC_002512.2 + 147944 0.67 0.902572
Target:  5'- gGCGGCCGCCgacgaggcCUcgcUCGGUUUCGUcgucaCGGu -3'
miRNA:   3'- -UGCUGGCGGa-------GA---AGCCGAAGCAc----GCC- -5'
8969 5' -57.1 NC_002512.2 + 1947 0.67 0.902572
Target:  5'- cGCGcucccCCGCCUCguccgcCGGCgUCGgagGCGGc -3'
miRNA:   3'- -UGCu----GGCGGAGaa----GCCGaAGCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 90940 0.67 0.902572
Target:  5'- cGCGGCCGCCgccgUCguggUGGUggugcUCGUGCuGGg -3'
miRNA:   3'- -UGCUGGCGG----AGaa--GCCGa----AGCACG-CC- -5'
8969 5' -57.1 NC_002512.2 + 135239 0.67 0.902572
Target:  5'- -gGGCCGCCUCga-GGCcgUCGUccGCGc -3'
miRNA:   3'- ugCUGGCGGAGaagCCGa-AGCA--CGCc -5'
8969 5' -57.1 NC_002512.2 + 101758 0.67 0.897059
Target:  5'- aGCcGCCGCCUgacCUUCGGCgagacggcgccguccUCGcgGCGGa -3'
miRNA:   3'- -UGcUGGCGGA---GAAGCCGa--------------AGCa-CGCC- -5'
8969 5' -57.1 NC_002512.2 + 142013 0.67 0.896436
Target:  5'- gGCGGCCGUCUCUUCcGCggcCGgggGcCGGc -3'
miRNA:   3'- -UGCUGGCGGAGAAGcCGaa-GCa--C-GCC- -5'
8969 5' -57.1 NC_002512.2 + 225049 0.67 0.896436
Target:  5'- gAUGGCCGCgCUCcUCGGCggCGcGCa- -3'
miRNA:   3'- -UGCUGGCG-GAGaAGCCGaaGCaCGcc -5'
8969 5' -57.1 NC_002512.2 + 146910 0.68 0.890089
Target:  5'- gGCGGCCGaCgUCUUCcGCgcCGUGCGc -3'
miRNA:   3'- -UGCUGGC-GgAGAAGcCGaaGCACGCc -5'
8969 5' -57.1 NC_002512.2 + 201417 0.68 0.883536
Target:  5'- cACGAUgCGCUUCUggugUCGGCgggUCGUcGCGa -3'
miRNA:   3'- -UGCUG-GCGGAGA----AGCCGa--AGCA-CGCc -5'
8969 5' -57.1 NC_002512.2 + 188785 0.68 0.883536
Target:  5'- gGCGGCUccgGCCUCggCGGCcccgaUCGcgGCGGc -3'
miRNA:   3'- -UGCUGG---CGGAGaaGCCGa----AGCa-CGCC- -5'
8969 5' -57.1 NC_002512.2 + 155351 0.68 0.876778
Target:  5'- cGCGGCCGCCU----GGCUguaccUCGUcagGCGGg -3'
miRNA:   3'- -UGCUGGCGGAgaagCCGA-----AGCA---CGCC- -5'
8969 5' -57.1 NC_002512.2 + 24522 0.68 0.876778
Target:  5'- cUGACCGCCUUccCGGUcagCGaGCGGg -3'
miRNA:   3'- uGCUGGCGGAGaaGCCGaa-GCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 117749 0.68 0.869822
Target:  5'- uCGACCGCCucgUCUUCGcGCca--UGCGGg -3'
miRNA:   3'- uGCUGGCGG---AGAAGC-CGaagcACGCC- -5'
8969 5' -57.1 NC_002512.2 + 216997 0.68 0.869822
Target:  5'- uGCGcCCGCCUCUcguucucccgcgUCGGCUUCa-GCa- -3'
miRNA:   3'- -UGCuGGCGGAGA------------AGCCGAAGcaCGcc -5'
8969 5' -57.1 NC_002512.2 + 82932 0.68 0.862671
Target:  5'- cGCGGCCGCCgUCgUCGcGCUUCacggccagcagGUcGCGGc -3'
miRNA:   3'- -UGCUGGCGG-AGaAGC-CGAAG-----------CA-CGCC- -5'
8969 5' -57.1 NC_002512.2 + 209441 0.68 0.861945
Target:  5'- gAUGACCGUCaucggccggcugaUCUUCGGCUcCG-GCGa -3'
miRNA:   3'- -UGCUGGCGG-------------AGAAGCCGAaGCaCGCc -5'
8969 5' -57.1 NC_002512.2 + 55197 0.69 0.854586
Target:  5'- cGCGGCCaaccugcugaacgGCCgguacCGGCUgaUCGUGCGGc -3'
miRNA:   3'- -UGCUGG-------------CGGagaa-GCCGA--AGCACGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.