Results 21 - 40 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 132144 | 0.71 | 0.745504 |
Target: 5'- gACGACCGCCaccUCgaggUCGGUgagcgcggcgUCGUgaGCGGg -3' miRNA: 3'- -UGCUGGCGG---AGa---AGCCGa---------AGCA--CGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 67725 | 0.71 | 0.754714 |
Target: 5'- cGCGGCCGCUUUcgCGGUcggCGUGcCGGc -3' miRNA: 3'- -UGCUGGCGGAGaaGCCGaa-GCAC-GCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 45218 | 0.71 | 0.754714 |
Target: 5'- gACGGCCGCCgaccggaUUUCGGCgcggCGcccGCGGa -3' miRNA: 3'- -UGCUGGCGGa------GAAGCCGaa--GCa--CGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 98572 | 0.7 | 0.763826 |
Target: 5'- gGCGGgCGCCUCgggCGGCgggUCGUccGCGc -3' miRNA: 3'- -UGCUgGCGGAGaa-GCCGa--AGCA--CGCc -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 222403 | 0.7 | 0.763826 |
Target: 5'- -gGAgCGCCg---CGGCUUCG-GCGGg -3' miRNA: 3'- ugCUgGCGGagaaGCCGAAGCaCGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 90652 | 0.7 | 0.772831 |
Target: 5'- cGCGGCCGCgguCUCggagUCGGCggccgCG-GCGGc -3' miRNA: 3'- -UGCUGGCG---GAGa---AGCCGaa---GCaCGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 98144 | 0.7 | 0.781721 |
Target: 5'- cGCGGCCGCC-CgcccCGGCggUCGccGCGGu -3' miRNA: 3'- -UGCUGGCGGaGaa--GCCGa-AGCa-CGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 147455 | 0.7 | 0.790488 |
Target: 5'- gGCGGCCGUCugucgcugcuggUCUUCGcGCgggCGcUGCGGa -3' miRNA: 3'- -UGCUGGCGG------------AGAAGC-CGaa-GC-ACGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 177484 | 0.7 | 0.807625 |
Target: 5'- cCGACCGCUUC-UCGGCcUCG-GCu- -3' miRNA: 3'- uGCUGGCGGAGaAGCCGaAGCaCGcc -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 187175 | 0.7 | 0.807625 |
Target: 5'- gACGuggcCCGCCaUCUUCGGCgugccggCGccGCGGg -3' miRNA: 3'- -UGCu---GGCGG-AGAAGCCGaa-----GCa-CGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 98351 | 0.7 | 0.807625 |
Target: 5'- gGCGGCCccuccGCCUCgucucccucCGGCgUCGUGgGGg -3' miRNA: 3'- -UGCUGG-----CGGAGaa-------GCCGaAGCACgCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 193748 | 0.7 | 0.807625 |
Target: 5'- -aGACCGUac--UCGGCUUCGUcaGCGGc -3' miRNA: 3'- ugCUGGCGgagaAGCCGAAGCA--CGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 110188 | 0.7 | 0.807625 |
Target: 5'- cCGGCCGCUUC-UCGcGCgcagggGUGCGGg -3' miRNA: 3'- uGCUGGCGGAGaAGC-CGaag---CACGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 82333 | 0.69 | 0.81598 |
Target: 5'- -gGGCCGCCcCggcggguagCGGUgggCGUGCGGg -3' miRNA: 3'- ugCUGGCGGaGaa-------GCCGaa-GCACGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 104929 | 0.69 | 0.81598 |
Target: 5'- cGCGACgGCCUCcucgucCGGCgUCGgcGCGGc -3' miRNA: 3'- -UGCUGgCGGAGaa----GCCGaAGCa-CGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 94041 | 0.69 | 0.824182 |
Target: 5'- cGCGGCgGaUCUCUUCGGCgacgacgggCGcgGCGGg -3' miRNA: 3'- -UGCUGgC-GGAGAAGCCGaa-------GCa-CGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 124592 | 0.69 | 0.824182 |
Target: 5'- aGCGA-CGCCcugucccucgUCUUCGGCgUCG-GCGGc -3' miRNA: 3'- -UGCUgGCGG----------AGAAGCCGaAGCaCGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 126334 | 0.69 | 0.832224 |
Target: 5'- cACGACCGCU--UUCGGCUgguggagaCGgccgGCGGc -3' miRNA: 3'- -UGCUGGCGGagAAGCCGAa-------GCa---CGCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 191191 | 0.69 | 0.832224 |
Target: 5'- gGCGACCGUCUCcuccgUCGGCU-CGgucuucccCGGg -3' miRNA: 3'- -UGCUGGCGGAGa----AGCCGAaGCac------GCC- -5' |
|||||||
8969 | 5' | -57.1 | NC_002512.2 | + | 179464 | 0.69 | 0.832224 |
Target: 5'- gGCGcCgGCCUCUUCcuggucuGCUUCG-GCGGc -3' miRNA: 3'- -UGCuGgCGGAGAAGc------CGAAGCaCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home