miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 5' -57.1 NC_002512.2 + 204005 1.1 0.003363
Target:  5'- uACGACCGCCUCUUCGGCUUCGUGCGGg -3'
miRNA:   3'- -UGCUGGCGGAGAAGCCGAAGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 124813 0.83 0.191772
Target:  5'- cCGACCGCCggcuUCUUCGGCUgCGUGcCGGa -3'
miRNA:   3'- uGCUGGCGG----AGAAGCCGAaGCAC-GCC- -5'
8969 5' -57.1 NC_002512.2 + 126508 0.77 0.400606
Target:  5'- cGCGAgCGCCUCggCGGCUcCG-GCGGc -3'
miRNA:   3'- -UGCUgGCGGAGaaGCCGAaGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 134180 0.76 0.45137
Target:  5'- cUGGCgGCgUUCUUCGGCgaCGUGCGGg -3'
miRNA:   3'- uGCUGgCG-GAGAAGCCGaaGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 201690 0.76 0.478038
Target:  5'- gGCGGCCGCgUCUggugCGGgaUCGgcgGCGGc -3'
miRNA:   3'- -UGCUGGCGgAGAa---GCCgaAGCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 189619 0.75 0.514751
Target:  5'- gGCGGCCGCacgcgaUCgucgcggUCGGCUUCGU-CGGg -3'
miRNA:   3'- -UGCUGGCGg-----AGa------AGCCGAAGCAcGCC- -5'
8969 5' -57.1 NC_002512.2 + 209848 0.74 0.571779
Target:  5'- -gGAUCGgCUCUUCGGCUgCcUGCGGg -3'
miRNA:   3'- ugCUGGCgGAGAAGCCGAaGcACGCC- -5'
8969 5' -57.1 NC_002512.2 + 217590 0.74 0.581451
Target:  5'- gGCGgcGCCGCCUCgggggucgUCGGCgacUCGgGCGGc -3'
miRNA:   3'- -UGC--UGGCGGAGa-------AGCCGa--AGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 86156 0.74 0.591155
Target:  5'- cGCGGCCGCCUCcgaGGCccUGcUGCGGg -3'
miRNA:   3'- -UGCUGGCGGAGaagCCGaaGC-ACGCC- -5'
8969 5' -57.1 NC_002512.2 + 29088 0.73 0.600888
Target:  5'- cGCGucCCGCCucgUCUUCGGCggCG-GCGGc -3'
miRNA:   3'- -UGCu-GGCGG---AGAAGCCGaaGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 88149 0.73 0.600888
Target:  5'- gACGAuCCGCCcg--UGGCcgUCGUGCGGg -3'
miRNA:   3'- -UGCU-GGCGGagaaGCCGa-AGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 140243 0.73 0.600888
Target:  5'- uCGACCGCUUCguccgccccgUCGGCUUCGUccGCa- -3'
miRNA:   3'- uGCUGGCGGAGa---------AGCCGAAGCA--CGcc -5'
8969 5' -57.1 NC_002512.2 + 17497 0.73 0.645827
Target:  5'- uCGGCCGCCUCcucgaucucgacgUCGGCgUCGgcguagGCGGc -3'
miRNA:   3'- uGCUGGCGGAGa------------AGCCGaAGCa-----CGCC- -5'
8969 5' -57.1 NC_002512.2 + 219250 0.72 0.659493
Target:  5'- uCGGCCGCCUCU--GGCUgcUCGUccggcaggggGCGGa -3'
miRNA:   3'- uGCUGGCGGAGAagCCGA--AGCA----------CGCC- -5'
8969 5' -57.1 NC_002512.2 + 116822 0.72 0.678944
Target:  5'- uCGACCGCCU----GGCccUCGUGCGGc -3'
miRNA:   3'- uGCUGGCGGAgaagCCGa-AGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 122933 0.72 0.695369
Target:  5'- cGCGAgCGCUgcaaCUUCGGCcUcgucuucaccgcgcUCGUGCGGg -3'
miRNA:   3'- -UGCUgGCGGa---GAAGCCG-A--------------AGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 193198 0.72 0.698254
Target:  5'- uCGACCGCgUCUUCGGCUcgcCGuUGCc- -3'
miRNA:   3'- uGCUGGCGgAGAAGCCGAa--GC-ACGcc -5'
8969 5' -57.1 NC_002512.2 + 42444 0.71 0.705925
Target:  5'- -gGGCCGCCUCcUCGGCgaagaaugaagCGgcaGCGGa -3'
miRNA:   3'- ugCUGGCGGAGaAGCCGaa---------GCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 209036 0.71 0.708793
Target:  5'- gGCGGCCGCgUCccggagcgauuccgaCGGCUccuccgacgacgucuUCGUGCGGg -3'
miRNA:   3'- -UGCUGGCGgAGaa-------------GCCGA---------------AGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 106711 0.71 0.72682
Target:  5'- cCGucCCGCCUCggccUCGGCcUCG-GCGGc -3'
miRNA:   3'- uGCu-GGCGGAGa---AGCCGaAGCaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.