miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 5' -57.1 NC_002512.2 + 21149 0.69 0.832224
Target:  5'- gGCGACUGCCUCcggUCGGCg----GCGc -3'
miRNA:   3'- -UGCUGGCGGAGa--AGCCGaagcaCGCc -5'
8969 5' -57.1 NC_002512.2 + 147455 0.7 0.790488
Target:  5'- gGCGGCCGUCugucgcugcuggUCUUCGcGCgggCGcUGCGGa -3'
miRNA:   3'- -UGCUGGCGG------------AGAAGC-CGaa-GC-ACGCC- -5'
8969 5' -57.1 NC_002512.2 + 98351 0.7 0.807625
Target:  5'- gGCGGCCccuccGCCUCgucucccucCGGCgUCGUGgGGg -3'
miRNA:   3'- -UGCUGG-----CGGAGaa-------GCCGaAGCACgCC- -5'
8969 5' -57.1 NC_002512.2 + 193748 0.7 0.807625
Target:  5'- -aGACCGUac--UCGGCUUCGUcaGCGGc -3'
miRNA:   3'- ugCUGGCGgagaAGCCGAAGCA--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 110188 0.7 0.807625
Target:  5'- cCGGCCGCUUC-UCGcGCgcagggGUGCGGg -3'
miRNA:   3'- uGCUGGCGGAGaAGC-CGaag---CACGCC- -5'
8969 5' -57.1 NC_002512.2 + 82333 0.69 0.81598
Target:  5'- -gGGCCGCCcCggcggguagCGGUgggCGUGCGGg -3'
miRNA:   3'- ugCUGGCGGaGaa-------GCCGaa-GCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 104929 0.69 0.81598
Target:  5'- cGCGACgGCCUCcucgucCGGCgUCGgcGCGGc -3'
miRNA:   3'- -UGCUGgCGGAGaa----GCCGaAGCa-CGCC- -5'
8969 5' -57.1 NC_002512.2 + 94041 0.69 0.824182
Target:  5'- cGCGGCgGaUCUCUUCGGCgacgacgggCGcgGCGGg -3'
miRNA:   3'- -UGCUGgC-GGAGAAGCCGaa-------GCa-CGCC- -5'
8969 5' -57.1 NC_002512.2 + 124592 0.69 0.824182
Target:  5'- aGCGA-CGCCcugucccucgUCUUCGGCgUCG-GCGGc -3'
miRNA:   3'- -UGCUgGCGG----------AGAAGCCGaAGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 98572 0.7 0.763826
Target:  5'- gGCGGgCGCCUCgggCGGCgggUCGUccGCGc -3'
miRNA:   3'- -UGCUgGCGGAGaa-GCCGa--AGCA--CGCc -5'
8969 5' -57.1 NC_002512.2 + 67725 0.71 0.754714
Target:  5'- cGCGGCCGCUUUcgCGGUcggCGUGcCGGc -3'
miRNA:   3'- -UGCUGGCGGAGaaGCCGaa-GCAC-GCC- -5'
8969 5' -57.1 NC_002512.2 + 45218 0.71 0.754714
Target:  5'- gACGGCCGCCgaccggaUUUCGGCgcggCGcccGCGGa -3'
miRNA:   3'- -UGCUGGCGGa------GAAGCCGaa--GCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 126508 0.77 0.400606
Target:  5'- cGCGAgCGCCUCggCGGCUcCG-GCGGc -3'
miRNA:   3'- -UGCUgGCGGAGaaGCCGAaGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 86156 0.74 0.591155
Target:  5'- cGCGGCCGCCUCcgaGGCccUGcUGCGGg -3'
miRNA:   3'- -UGCUGGCGGAGaagCCGaaGC-ACGCC- -5'
8969 5' -57.1 NC_002512.2 + 140243 0.73 0.600888
Target:  5'- uCGACCGCUUCguccgccccgUCGGCUUCGUccGCa- -3'
miRNA:   3'- uGCUGGCGGAGa---------AGCCGAAGCA--CGcc -5'
8969 5' -57.1 NC_002512.2 + 29088 0.73 0.600888
Target:  5'- cGCGucCCGCCucgUCUUCGGCggCG-GCGGc -3'
miRNA:   3'- -UGCu-GGCGG---AGAAGCCGaaGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 17497 0.73 0.645827
Target:  5'- uCGGCCGCCUCcucgaucucgacgUCGGCgUCGgcguagGCGGc -3'
miRNA:   3'- uGCUGGCGGAGa------------AGCCGaAGCa-----CGCC- -5'
8969 5' -57.1 NC_002512.2 + 116822 0.72 0.678944
Target:  5'- uCGACCGCCU----GGCccUCGUGCGGc -3'
miRNA:   3'- uGCUGGCGGAgaagCCGa-AGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 122933 0.72 0.695369
Target:  5'- cGCGAgCGCUgcaaCUUCGGCcUcgucuucaccgcgcUCGUGCGGg -3'
miRNA:   3'- -UGCUgGCGGa---GAAGCCG-A--------------AGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 42444 0.71 0.705925
Target:  5'- -gGGCCGCCUCcUCGGCgaagaaugaagCGgcaGCGGa -3'
miRNA:   3'- ugCUGGCGGAGaAGCCGaa---------GCa--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.