miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 5' -57.1 NC_002512.2 + 1947 0.67 0.902572
Target:  5'- cGCGcucccCCGCCUCguccgcCGGCgUCGgagGCGGc -3'
miRNA:   3'- -UGCu----GGCGGAGaa----GCCGaAGCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 3041 0.66 0.948076
Target:  5'- gGCGGCCugcuccGCCUUgaCGGCggCGgacGCGGc -3'
miRNA:   3'- -UGCUGG------CGGAGaaGCCGaaGCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 5350 0.66 0.939483
Target:  5'- cGCGACCGUCa--UCGGUcUCGUGgaCGGu -3'
miRNA:   3'- -UGCUGGCGGagaAGCCGaAGCAC--GCC- -5'
8969 5' -57.1 NC_002512.2 + 17497 0.73 0.645827
Target:  5'- uCGGCCGCCUCcucgaucucgacgUCGGCgUCGgcguagGCGGc -3'
miRNA:   3'- uGCUGGCGGAGa------------AGCCGaAGCa-----CGCC- -5'
8969 5' -57.1 NC_002512.2 + 21149 0.69 0.832224
Target:  5'- gGCGACUGCCUCcggUCGGCg----GCGc -3'
miRNA:   3'- -UGCUGGCGGAGa--AGCCGaagcaCGCc -5'
8969 5' -57.1 NC_002512.2 + 23337 0.66 0.943887
Target:  5'- -gGGCCGCCgg--CGGUguacgaGUGCGGc -3'
miRNA:   3'- ugCUGGCGGagaaGCCGaag---CACGCC- -5'
8969 5' -57.1 NC_002512.2 + 24522 0.68 0.876778
Target:  5'- cUGACCGCCUUccCGGUcagCGaGCGGg -3'
miRNA:   3'- uGCUGGCGGAGaaGCCGaa-GCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 29088 0.73 0.600888
Target:  5'- cGCGucCCGCCucgUCUUCGGCggCG-GCGGc -3'
miRNA:   3'- -UGCu-GGCGG---AGAAGCCGaaGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 42444 0.71 0.705925
Target:  5'- -gGGCCGCCUCcUCGGCgaagaaugaagCGgcaGCGGa -3'
miRNA:   3'- ugCUGGCGGAGaAGCCGaa---------GCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 45218 0.71 0.754714
Target:  5'- gACGGCCGCCgaccggaUUUCGGCgcggCGcccGCGGa -3'
miRNA:   3'- -UGCUGGCGGa------GAAGCCGaa--GCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 55197 0.69 0.854586
Target:  5'- cGCGGCCaaccugcugaacgGCCgguacCGGCUgaUCGUGCGGc -3'
miRNA:   3'- -UGCUGG-------------CGGagaa-GCCGA--AGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 67725 0.71 0.754714
Target:  5'- cGCGGCCGCUUUcgCGGUcggCGUGcCGGc -3'
miRNA:   3'- -UGCUGGCGGAGaaGCCGaa-GCAC-GCC- -5'
8969 5' -57.1 NC_002512.2 + 82333 0.69 0.81598
Target:  5'- -gGGCCGCCcCggcggguagCGGUgggCGUGCGGg -3'
miRNA:   3'- ugCUGGCGGaGaa-------GCCGaa-GCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 82932 0.68 0.862671
Target:  5'- cGCGGCCGCCgUCgUCGcGCUUCacggccagcagGUcGCGGc -3'
miRNA:   3'- -UGCUGGCGG-AGaAGC-CGAAG-----------CA-CGCC- -5'
8969 5' -57.1 NC_002512.2 + 86156 0.74 0.591155
Target:  5'- cGCGGCCGCCUCcgaGGCccUGcUGCGGg -3'
miRNA:   3'- -UGCUGGCGGAGaagCCGaaGC-ACGCC- -5'
8969 5' -57.1 NC_002512.2 + 88149 0.73 0.600888
Target:  5'- gACGAuCCGCCcg--UGGCcgUCGUGCGGg -3'
miRNA:   3'- -UGCU-GGCGGagaaGCCGa-AGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 90652 0.7 0.772831
Target:  5'- cGCGGCCGCgguCUCggagUCGGCggccgCG-GCGGc -3'
miRNA:   3'- -UGCUGGCG---GAGa---AGCCGaa---GCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 90940 0.67 0.902572
Target:  5'- cGCGGCCGCCgccgUCguggUGGUggugcUCGUGCuGGg -3'
miRNA:   3'- -UGCUGGCGG----AGaa--GCCGa----AGCACG-CC- -5'
8969 5' -57.1 NC_002512.2 + 94041 0.69 0.824182
Target:  5'- cGCGGCgGaUCUCUUCGGCgacgacgggCGcgGCGGg -3'
miRNA:   3'- -UGCUGgC-GGAGAAGCCGaa-------GCa-CGCC- -5'
8969 5' -57.1 NC_002512.2 + 96203 0.66 0.930025
Target:  5'- gGCGGCCGCgaggUCGGCcaCG-GCGGc -3'
miRNA:   3'- -UGCUGGCGgagaAGCCGaaGCaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.