miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8969 5' -57.1 NC_002512.2 + 98137 0.66 0.939483
Target:  5'- gACGuuCCGgCUCUUCGGacaccggUUCG-GCGGu -3'
miRNA:   3'- -UGCu-GGCgGAGAAGCCg------AAGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 130301 0.66 0.952052
Target:  5'- gACGugCcguacGCCgUgUUCGGCUUCGguccgaaGCGGu -3'
miRNA:   3'- -UGCugG-----CGG-AgAAGCCGAAGCa------CGCC- -5'
8969 5' -57.1 NC_002512.2 + 154650 0.66 0.948076
Target:  5'- cGCGGCCGCgCUCgucaccgcgaCGGCguuaacgCG-GCGGa -3'
miRNA:   3'- -UGCUGGCG-GAGaa--------GCCGaa-----GCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 23337 0.66 0.943887
Target:  5'- -gGGCCGCCgg--CGGUguacgaGUGCGGc -3'
miRNA:   3'- ugCUGGCGGagaaGCCGaag---CACGCC- -5'
8969 5' -57.1 NC_002512.2 + 127687 0.66 0.941712
Target:  5'- cGCGAUCGCCgcgaugaaGGacgagguggaggauCUUCGUGCGGu -3'
miRNA:   3'- -UGCUGGCGGagaag---CC--------------GAAGCACGCC- -5'
8969 5' -57.1 NC_002512.2 + 134135 0.66 0.939483
Target:  5'- gGCGGCCGUCg---CGGCgcgCGUcccggccgGCGGg -3'
miRNA:   3'- -UGCUGGCGGagaaGCCGaa-GCA--------CGCC- -5'
8969 5' -57.1 NC_002512.2 + 108079 0.66 0.92953
Target:  5'- gGCGAUCGUCgucgucgucgucgUCUUCGGCguccccgccUCG-GCGGu -3'
miRNA:   3'- -UGCUGGCGG-------------AGAAGCCGa--------AGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 172895 0.66 0.930025
Target:  5'- cCGGCCGCCca--CGGCUguccccCGUGgGGa -3'
miRNA:   3'- uGCUGGCGGagaaGCCGAa-----GCACgCC- -5'
8969 5' -57.1 NC_002512.2 + 126458 0.66 0.943887
Target:  5'- gGCGGCCGCCUUgUUCGcCgucgUCGUcGCGu -3'
miRNA:   3'- -UGCUGGCGGAG-AAGCcGa---AGCA-CGCc -5'
8969 5' -57.1 NC_002512.2 + 5350 0.66 0.939483
Target:  5'- cGCGACCGUCa--UCGGUcUCGUGgaCGGu -3'
miRNA:   3'- -UGCUGGCGGagaAGCCGaAGCAC--GCC- -5'
8969 5' -57.1 NC_002512.2 + 164275 0.66 0.943887
Target:  5'- uCGAUCGCCUCg--GGCUUCGUc--- -3'
miRNA:   3'- uGCUGGCGGAGaagCCGAAGCAcgcc -5'
8969 5' -57.1 NC_002512.2 + 3041 0.66 0.948076
Target:  5'- gGCGGCCugcuccGCCUUgaCGGCggCGgacGCGGc -3'
miRNA:   3'- -UGCUGG------CGGAGaaGCCGaaGCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 96203 0.66 0.930025
Target:  5'- gGCGGCCGCgaggUCGGCcaCG-GCGGc -3'
miRNA:   3'- -UGCUGGCGgagaAGCCGaaGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 219220 0.66 0.939483
Target:  5'- -gGGCCgGCCUCggcgaggUCGGgaUCGUGCn- -3'
miRNA:   3'- ugCUGG-CGGAGa------AGCCgaAGCACGcc -5'
8969 5' -57.1 NC_002512.2 + 100247 0.67 0.914204
Target:  5'- gGCGACCGCgUCcUCGGa---GaGCGGg -3'
miRNA:   3'- -UGCUGGCGgAGaAGCCgaagCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 1947 0.67 0.902572
Target:  5'- cGCGcucccCCGCCUCguccgcCGGCgUCGgagGCGGc -3'
miRNA:   3'- -UGCu----GGCGGAGaa----GCCGaAGCa--CGCC- -5'
8969 5' -57.1 NC_002512.2 + 103443 0.67 0.908496
Target:  5'- gGCGGCCGCCgccgUCgcCGGC--CGgGCGGg -3'
miRNA:   3'- -UGCUGGCGG----AGaaGCCGaaGCaCGCC- -5'
8969 5' -57.1 NC_002512.2 + 90940 0.67 0.902572
Target:  5'- cGCGGCCGCCgccgUCguggUGGUggugcUCGUGCuGGg -3'
miRNA:   3'- -UGCUGGCGG----AGaa--GCCGa----AGCACG-CC- -5'
8969 5' -57.1 NC_002512.2 + 142013 0.67 0.896436
Target:  5'- gGCGGCCGUCUCUUCcGCggcCGgggGcCGGc -3'
miRNA:   3'- -UGCUGGCGGAGAAGcCGaa-GCa--C-GCC- -5'
8969 5' -57.1 NC_002512.2 + 135239 0.67 0.902572
Target:  5'- -gGGCCGCCUCga-GGCcgUCGUccGCGc -3'
miRNA:   3'- ugCUGGCGGAGaagCCGa-AGCA--CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.