miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 137504 0.66 0.973644
Target:  5'- aCUGCaggACCGacgUCAGGAACGgggACAGCAc- -3'
miRNA:   3'- aGACG---UGGU---GGUCCUUGC---UGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 45509 0.66 0.972839
Target:  5'- gUCgGUACCAUCAGGAcGgGACcgcaauccgaucggGGCGUCg -3'
miRNA:   3'- -AGaCGUGGUGGUCCU-UgCUG--------------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 211509 0.66 0.972839
Target:  5'- cCUGUGCCGCCAcaucGGccgcgaucucauguuCGACAGCAUg -3'
miRNA:   3'- aGACGUGGUGGU----CCuu-------------GCUGUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 128045 0.66 0.970892
Target:  5'- gCUGCACgGCCcc-GACGgucGCGGCGUCg -3'
miRNA:   3'- aGACGUGgUGGuccUUGC---UGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 179632 0.66 0.970892
Target:  5'- aUCUuCACCACagcuGGAucgGCGACGGCGa- -3'
miRNA:   3'- -AGAcGUGGUGgu--CCU---UGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 81802 0.66 0.970892
Target:  5'- --cGcCGCCGCCGGGGgacggacgaccGCGGC-GCGUCc -3'
miRNA:   3'- agaC-GUGGUGGUCCU-----------UGCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 7580 0.66 0.970892
Target:  5'- cUCcgGUACCGCCuccGGCGGCAGCgGUCg -3'
miRNA:   3'- -AGa-CGUGGUGGuccUUGCUGUCG-UAG- -5'
8970 5' -54.1 NC_002512.2 + 72095 0.66 0.970892
Target:  5'- cCUGCacACCGCCcGGuucuugauGCGACAGCu-- -3'
miRNA:   3'- aGACG--UGGUGGuCCu-------UGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 3046 0.67 0.96794
Target:  5'- cCUGCuCCGCCuu-GACGGCGGCGg- -3'
miRNA:   3'- aGACGuGGUGGuccUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 167088 0.67 0.96794
Target:  5'- gCUGCugGCCACCuccgcguacauGGAGCGGCAcuGCAa- -3'
miRNA:   3'- aGACG--UGGUGGu----------CCUUGCUGU--CGUag -5'
8970 5' -54.1 NC_002512.2 + 200793 0.67 0.96794
Target:  5'- --cGcCGCCGCCgaagacgaggcGGGAcGCGACGGCAUg -3'
miRNA:   3'- agaC-GUGGUGG-----------UCCU-UGCUGUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 157950 0.67 0.96794
Target:  5'- uUCUgGCACCGCguGuuccaGAAcucccugccCGACAGCGUCg -3'
miRNA:   3'- -AGA-CGUGGUGguC-----CUU---------GCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 57870 0.67 0.96794
Target:  5'- gCUGCcgGCCggACCGGcGACGGCGGCGa- -3'
miRNA:   3'- aGACG--UGG--UGGUCcUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 97354 0.67 0.96794
Target:  5'- aCgGCGCCGCCcgcggagcgGGGAccGCGGCGGCc-- -3'
miRNA:   3'- aGaCGUGGUGG---------UCCU--UGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 36168 0.67 0.967633
Target:  5'- -aUGC-CCACCAGGuuauuugGACGAC-GCGUg -3'
miRNA:   3'- agACGuGGUGGUCC-------UUGCUGuCGUAg -5'
8970 5' -54.1 NC_002512.2 + 84892 0.67 0.967633
Target:  5'- --aGCGCUcgACCuccuuccggaagcGGGAGCGgaGCAGCGUCg -3'
miRNA:   3'- agaCGUGG--UGG-------------UCCUUGC--UGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 91777 0.67 0.967633
Target:  5'- cCUuCACCcCCAGGGccagcguGCGGCuGCGUCu -3'
miRNA:   3'- aGAcGUGGuGGUCCU-------UGCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 97322 0.67 0.96478
Target:  5'- --cGCGcCCGCCGGGGuCGAgGGCGg- -3'
miRNA:   3'- agaCGU-GGUGGUCCUuGCUgUCGUag -5'
8970 5' -54.1 NC_002512.2 + 100051 0.67 0.96478
Target:  5'- --gGCGCUgagACgCGGGGGCGGCGGCGc- -3'
miRNA:   3'- agaCGUGG---UG-GUCCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 82596 0.67 0.96478
Target:  5'- cUCUcCcCC-CCGGGAACGACgcgcGGCGUCc -3'
miRNA:   3'- -AGAcGuGGuGGUCCUUGCUG----UCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.