miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 138042 0.66 0.978346
Target:  5'- --gGCAUgaGCCGGGAcuggucgACgGACGGCGUCa -3'
miRNA:   3'- agaCGUGg-UGGUCCU-------UG-CUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 157641 0.66 0.978346
Target:  5'- cCUGCACCugCGGGAcaccaaGAUccugaagAGCAUg -3'
miRNA:   3'- aGACGUGGugGUCCUug----CUG-------UCGUAg -5'
8970 5' -54.1 NC_002512.2 + 75128 0.66 0.977882
Target:  5'- gCUGCuggugguggucaccGCCACCGGGGGCGGauucccGUGUCc -3'
miRNA:   3'- aGACG--------------UGGUGGUCCUUGCUgu----CGUAG- -5'
8970 5' -54.1 NC_002512.2 + 114136 0.66 0.976203
Target:  5'- gUUGUAgaaguaCACCAuGGugGGCAGCGUCg -3'
miRNA:   3'- aGACGUg-----GUGGUcCUugCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 138170 0.66 0.976203
Target:  5'- gUCcGCAcCCGCCGGGcuGCGuguGCAUCg -3'
miRNA:   3'- -AGaCGU-GGUGGUCCu-UGCuguCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 29949 0.66 0.976203
Target:  5'- gCUGgACaGCCGGuGAGCGGCGGCc-- -3'
miRNA:   3'- aGACgUGgUGGUC-CUUGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 13410 0.66 0.976203
Target:  5'- gCUGCGCCucCCuguGGGACGcCGGCu-- -3'
miRNA:   3'- aGACGUGGu-GGu--CCUUGCuGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 189418 0.66 0.976203
Target:  5'- uUCUcCGCCGCgAGGAAuagaccuucCGucuCAGCAUCg -3'
miRNA:   3'- -AGAcGUGGUGgUCCUU---------GCu--GUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 166623 0.66 0.976203
Target:  5'- gCUcCGCguCCGGGAACGuCGGCuAUCa -3'
miRNA:   3'- aGAcGUGguGGUCCUUGCuGUCG-UAG- -5'
8970 5' -54.1 NC_002512.2 + 148425 0.66 0.976203
Target:  5'- cCUGCgggACCGCCGGGGgaggACGGgGGCc-- -3'
miRNA:   3'- aGACG---UGGUGGUCCU----UGCUgUCGuag -5'
8970 5' -54.1 NC_002512.2 + 175645 0.66 0.973644
Target:  5'- cCUGCGCUGC--GGAcguGCGAguGCGUCu -3'
miRNA:   3'- aGACGUGGUGguCCU---UGCUguCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 225790 0.66 0.973644
Target:  5'- gCUGCGCCgGCCGGGccGCgGGCGGCc-- -3'
miRNA:   3'- aGACGUGG-UGGUCCu-UG-CUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 200947 0.66 0.973644
Target:  5'- uUCUGCGCCGUCGaguGGuACGGCAG-AUCg -3'
miRNA:   3'- -AGACGUGGUGGU---CCuUGCUGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 192112 0.66 0.973644
Target:  5'- -aUGUuCCA-CGGGAGCGACAGCc-- -3'
miRNA:   3'- agACGuGGUgGUCCUUGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 227456 0.66 0.973644
Target:  5'- --cGCGCUgccgggggagagGCCGGGGGCGGcCGGCcgCg -3'
miRNA:   3'- agaCGUGG------------UGGUCCUUGCU-GUCGuaG- -5'
8970 5' -54.1 NC_002512.2 + 21539 0.66 0.973644
Target:  5'- --cGCACCugCuccucGGGggUGAgGGUGUCg -3'
miRNA:   3'- agaCGUGGugG-----UCCuuGCUgUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 220514 0.66 0.973644
Target:  5'- cCUGCGUCGCCcgggaccuggAGGAgcugcugcGCGAgGGCGUCa -3'
miRNA:   3'- aGACGUGGUGG----------UCCU--------UGCUgUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 188647 0.66 0.973644
Target:  5'- --gGCGCCGgCGGcGGCGGCGGCccGUCg -3'
miRNA:   3'- agaCGUGGUgGUCcUUGCUGUCG--UAG- -5'
8970 5' -54.1 NC_002512.2 + 179081 0.66 0.973644
Target:  5'- gUCUGUACagCGCCGGGGcCGAC-GCcUCg -3'
miRNA:   3'- -AGACGUG--GUGGUCCUuGCUGuCGuAG- -5'
8970 5' -54.1 NC_002512.2 + 137504 0.66 0.973644
Target:  5'- aCUGCaggACCGacgUCAGGAACGgggACAGCAc- -3'
miRNA:   3'- aGACG---UGGU---GGUCCUUGC---UGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.