miRNA display CGI


Results 21 - 40 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 90468 0.66 0.978575
Target:  5'- gCUGCggguccccgAUCACCGGGGcguccuCGACGGgAUCg -3'
miRNA:   3'- aGACG---------UGGUGGUCCUu-----GCUGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 166623 0.66 0.976203
Target:  5'- gCUcCGCguCCGGGAACGuCGGCuAUCa -3'
miRNA:   3'- aGAcGUGguGGUCCUUGCuGUCG-UAG- -5'
8970 5' -54.1 NC_002512.2 + 157641 0.66 0.978346
Target:  5'- cCUGCACCugCGGGAcaccaaGAUccugaagAGCAUg -3'
miRNA:   3'- aGACGUGGugGUCCUug----CUG-------UCGUAg -5'
8970 5' -54.1 NC_002512.2 + 75128 0.66 0.977882
Target:  5'- gCUGCuggugguggucaccGCCACCGGGGGCGGauucccGUGUCc -3'
miRNA:   3'- aGACG--------------UGGUGGUCCUUGCUgu----CGUAG- -5'
8970 5' -54.1 NC_002512.2 + 168446 0.66 0.979473
Target:  5'- --gGcCACCAgCAGGAucugcucuaugcacuGCGACGGCAc- -3'
miRNA:   3'- agaC-GUGGUgGUCCU---------------UGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 225790 0.66 0.973644
Target:  5'- gCUGCGCCgGCCGGGccGCgGGCGGCc-- -3'
miRNA:   3'- aGACGUGG-UGGUCCu-UG-CUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 220514 0.66 0.973644
Target:  5'- cCUGCGUCGCCcgggaccuggAGGAgcugcugcGCGAgGGCGUCa -3'
miRNA:   3'- aGACGUGGUGG----------UCCU--------UGCUgUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 200158 0.66 0.978575
Target:  5'- --cGCGCCGCCAcGGuaggGCGACAcgGUCa -3'
miRNA:   3'- agaCGUGGUGGU-CCu---UGCUGUcgUAG- -5'
8970 5' -54.1 NC_002512.2 + 132583 0.66 0.978575
Target:  5'- --gGCGCgGCCAGGGguuCGGCgAGCAg- -3'
miRNA:   3'- agaCGUGgUGGUCCUu--GCUG-UCGUag -5'
8970 5' -54.1 NC_002512.2 + 116963 0.66 0.980767
Target:  5'- --cGCGCCACCGGGccgcCGACGcccCGUCc -3'
miRNA:   3'- agaCGUGGUGGUCCuu--GCUGUc--GUAG- -5'
8970 5' -54.1 NC_002512.2 + 185560 0.66 0.980767
Target:  5'- --gGCgugGCCgucgaggggACCuGGAACGGCAGCAUg -3'
miRNA:   3'- agaCG---UGG---------UGGuCCUUGCUGUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 138170 0.66 0.976203
Target:  5'- gUCcGCAcCCGCCGGGcuGCGuguGCAUCg -3'
miRNA:   3'- -AGaCGU-GGUGGUCCu-UGCuguCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 148425 0.66 0.976203
Target:  5'- cCUGCgggACCGCCGGGGgaggACGGgGGCc-- -3'
miRNA:   3'- aGACG---UGGUGGUCCU----UGCUgUCGuag -5'
8970 5' -54.1 NC_002512.2 + 200947 0.66 0.973644
Target:  5'- uUCUGCGCCGUCGaguGGuACGGCAG-AUCg -3'
miRNA:   3'- -AGACGUGGUGGU---CCuUGCUGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 219404 0.66 0.980128
Target:  5'- gUCgGC-CCGCCGcgacgcccacgcccGGGGCGGCGGCGg- -3'
miRNA:   3'- -AGaCGuGGUGGU--------------CCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 192603 0.66 0.978575
Target:  5'- gCUGCGgCGCgcgCGGcGGGCGACGGCGg- -3'
miRNA:   3'- aGACGUgGUG---GUC-CUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 206191 0.66 0.978575
Target:  5'- --gGCACggaCACCAGGAagcaGCGGCGGUg-- -3'
miRNA:   3'- agaCGUG---GUGGUCCU----UGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 227456 0.66 0.973644
Target:  5'- --cGCGCUgccgggggagagGCCGGGGGCGGcCGGCcgCg -3'
miRNA:   3'- agaCGUGG------------UGGUCCUUGCU-GUCGuaG- -5'
8970 5' -54.1 NC_002512.2 + 184880 0.66 0.978575
Target:  5'- gCUGCuacuGCCACgGGGucagcgGGCGGCGGCGc- -3'
miRNA:   3'- aGACG----UGGUGgUCC------UUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 72095 0.66 0.970892
Target:  5'- cCUGCacACCGCCcGGuucuugauGCGACAGCu-- -3'
miRNA:   3'- aGACG--UGGUGGuCCu-------UGCUGUCGuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.