miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 197229 0.65 0.982592
Target:  5'- aCUGCcucaaccgcaucuACCGCCuGGc-CGACAGCuUCa -3'
miRNA:   3'- aGACG-------------UGGUGGuCCuuGCUGUCGuAG- -5'
8970 5' -54.1 NC_002512.2 + 154559 0.65 0.981999
Target:  5'- cUCgGuCGCCAUgggggggCAGGAuaacggcgagggcgACGGCGGCAUCg -3'
miRNA:   3'- -AGaC-GUGGUG-------GUCCU--------------UGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 21539 0.66 0.973644
Target:  5'- --cGCACCugCuccucGGGggUGAgGGUGUCg -3'
miRNA:   3'- agaCGUGGugG-----UCCuuGCUgUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 116963 0.66 0.980767
Target:  5'- --cGCGCCACCGGGccgcCGACGcccCGUCc -3'
miRNA:   3'- agaCGUGGUGGUCCuu--GCUGUc--GUAG- -5'
8970 5' -54.1 NC_002512.2 + 29949 0.66 0.976203
Target:  5'- gCUGgACaGCCGGuGAGCGGCGGCc-- -3'
miRNA:   3'- aGACgUGgUGGUC-CUUGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 72095 0.66 0.970892
Target:  5'- cCUGCacACCGCCcGGuucuugauGCGACAGCu-- -3'
miRNA:   3'- aGACG--UGGUGGuCCu-------UGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 138042 0.66 0.978346
Target:  5'- --gGCAUgaGCCGGGAcuggucgACgGACGGCGUCa -3'
miRNA:   3'- agaCGUGg-UGGUCCU-------UG-CUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 109349 0.66 0.981595
Target:  5'- cUCUGCgagggaGCCGCCGGGGGaaagccgcgccucccCGucaccgcgaucgGCGGCGUCg -3'
miRNA:   3'- -AGACG------UGGUGGUCCUU---------------GC------------UGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 121304 0.66 0.980767
Target:  5'- --cGCucuCCGCCcGGAaccacaGCGACAGCAc- -3'
miRNA:   3'- agaCGu--GGUGGuCCU------UGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 100681 0.66 0.980767
Target:  5'- uUCUcCGCgGCCAGcGGCGGCGGCcUCc -3'
miRNA:   3'- -AGAcGUGgUGGUCcUUGCUGUCGuAG- -5'
8970 5' -54.1 NC_002512.2 + 81802 0.66 0.970892
Target:  5'- --cGcCGCCGCCGGGGgacggacgaccGCGGC-GCGUCc -3'
miRNA:   3'- agaC-GUGGUGGUCCU-----------UGCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 28252 0.66 0.980767
Target:  5'- --cGCGCCGCgAGu-ACGACGGCGc- -3'
miRNA:   3'- agaCGUGGUGgUCcuUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 7580 0.66 0.970892
Target:  5'- cUCcgGUACCGCCuccGGCGGCAGCgGUCg -3'
miRNA:   3'- -AGa-CGUGGUGGuccUUGCUGUCG-UAG- -5'
8970 5' -54.1 NC_002512.2 + 189418 0.66 0.976203
Target:  5'- uUCUcCGCCGCgAGGAAuagaccuucCGucuCAGCAUCg -3'
miRNA:   3'- -AGAcGUGGUGgUCCUU---------GCu--GUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 137504 0.66 0.973644
Target:  5'- aCUGCaggACCGacgUCAGGAACGgggACAGCAc- -3'
miRNA:   3'- aGACG---UGGU---GGUCCUUGC---UGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 122880 0.66 0.980767
Target:  5'- --cGUcgGCCGCCuaccgagaGGGAgacgacgaggACGACGGCAUCu -3'
miRNA:   3'- agaCG--UGGUGG--------UCCU----------UGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 114136 0.66 0.976203
Target:  5'- gUUGUAgaaguaCACCAuGGugGGCAGCGUCg -3'
miRNA:   3'- aGACGUg-----GUGGUcCUugCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 110812 0.66 0.978575
Target:  5'- --cGCGCgACCGGucGAGgGACAGCAg- -3'
miRNA:   3'- agaCGUGgUGGUC--CUUgCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 13410 0.66 0.976203
Target:  5'- gCUGCGCCucCCuguGGGACGcCGGCu-- -3'
miRNA:   3'- aGACGUGGu-GGu--CCUUGCuGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 125546 0.66 0.980767
Target:  5'- --cGCGgCACCAGGAAC-ACGGUg-- -3'
miRNA:   3'- agaCGUgGUGGUCCUUGcUGUCGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.