miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 171 0.68 0.94571
Target:  5'- --aGCGCgCGCCGGGAGgGACGGgGg- -3'
miRNA:   3'- agaCGUG-GUGGUCCUUgCUGUCgUag -5'
8970 5' -54.1 NC_002512.2 + 2026 0.77 0.498463
Target:  5'- --gGCACCAggAGGAGCGACAGCAg- -3'
miRNA:   3'- agaCGUGGUggUCCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 2062 0.67 0.954011
Target:  5'- --gGCGCCAgCGGGAGCG-CGGaGUCc -3'
miRNA:   3'- agaCGUGGUgGUCCUUGCuGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 3046 0.67 0.96794
Target:  5'- cCUGCuCCGCCuu-GACGGCGGCGg- -3'
miRNA:   3'- aGACGuGGUGGuccUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 4837 0.76 0.567305
Target:  5'- --cGCGCCGCCgAGGAGCG-CGGcCAUCg -3'
miRNA:   3'- agaCGUGGUGG-UCCUUGCuGUC-GUAG- -5'
8970 5' -54.1 NC_002512.2 + 5167 0.67 0.957821
Target:  5'- --gGCGCgACCGGG-GCGGCGGCc-- -3'
miRNA:   3'- agaCGUGgUGGUCCuUGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 7580 0.66 0.970892
Target:  5'- cUCcgGUACCGCCuccGGCGGCAGCgGUCg -3'
miRNA:   3'- -AGa-CGUGGUGGuccUUGCUGUCG-UAG- -5'
8970 5' -54.1 NC_002512.2 + 8110 0.68 0.941212
Target:  5'- --aGCAggCGCCAGGAcACGACGGCcgCc -3'
miRNA:   3'- agaCGUg-GUGGUCCU-UGCUGUCGuaG- -5'
8970 5' -54.1 NC_002512.2 + 9330 0.7 0.883311
Target:  5'- --cGCACgGCCAGGuaGACGGCGGUg-- -3'
miRNA:   3'- agaCGUGgUGGUCC--UUGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 10406 0.71 0.821163
Target:  5'- gUCUGaccCGCC-CCAGGGgcACGACcGCGUCg -3'
miRNA:   3'- -AGAC---GUGGuGGUCCU--UGCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 10469 0.71 0.845941
Target:  5'- --cGcCGCCGCCccGGGCGugGGCGUCg -3'
miRNA:   3'- agaC-GUGGUGGucCUUGCugUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 11238 0.7 0.86151
Target:  5'- aUCcGCcuccguCCGCCGGGcGCGACAGgGUCc -3'
miRNA:   3'- -AGaCGu-----GGUGGUCCuUGCUGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 12767 0.69 0.915189
Target:  5'- gCUGCuGCCGCCgcAGGAcuCGGCGGCGc- -3'
miRNA:   3'- aGACG-UGGUGG--UCCUu-GCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 13410 0.66 0.976203
Target:  5'- gCUGCGCCucCCuguGGGACGcCGGCu-- -3'
miRNA:   3'- aGACGUGGu-GGu--CCUUGCuGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 21458 0.69 0.909276
Target:  5'- aUCggGgGCCggcGCCGGGAGCGGCgcccguagAGCAUCc -3'
miRNA:   3'- -AGa-CgUGG---UGGUCCUUGCUG--------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 21539 0.66 0.973644
Target:  5'- --cGCACCugCuccucGGGggUGAgGGUGUCg -3'
miRNA:   3'- agaCGUGGugG-----UCCuuGCUgUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 21962 0.67 0.96478
Target:  5'- --aGCACCACCGGGcccguuCGAgCuccGCGUCg -3'
miRNA:   3'- agaCGUGGUGGUCCuu----GCU-Gu--CGUAG- -5'
8970 5' -54.1 NC_002512.2 + 28252 0.66 0.980767
Target:  5'- --cGCGCCGCgAGu-ACGACGGCGc- -3'
miRNA:   3'- agaCGUGGUGgUCcuUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 29949 0.66 0.976203
Target:  5'- gCUGgACaGCCGGuGAGCGGCGGCc-- -3'
miRNA:   3'- aGACgUGgUGGUC-CUUGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 34908 0.67 0.95745
Target:  5'- cUUGCGCCGagAGGAggacgagACGACGGCGg- -3'
miRNA:   3'- aGACGUGGUggUCCU-------UGCUGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.