miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 202895 1.11 0.004453
Target:  5'- gUCUGCACCACCAGGAACGACAGCAUCa -3'
miRNA:   3'- -AGACGUGGUGGUCCUUGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 203380 0.81 0.320051
Target:  5'- gUUGCucAgCAUCAGGAACGGCAGCGUCg -3'
miRNA:   3'- aGACG--UgGUGGUCCUUGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 106022 0.8 0.357914
Target:  5'- --gGCGCCGCCGGGggUG-CGGCGUCc -3'
miRNA:   3'- agaCGUGGUGGUCCuuGCuGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 2026 0.77 0.498463
Target:  5'- --gGCACCAggAGGAGCGACAGCAg- -3'
miRNA:   3'- agaCGUGGUggUCCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 224043 0.77 0.50809
Target:  5'- aCgGgGCCGCCGGGGACGACucgucgGGCGUCu -3'
miRNA:   3'- aGaCgUGGUGGUCCUUGCUG------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 129964 0.77 0.52659
Target:  5'- gUCUGCgacgcgaucgaacACCGCCGGGAGCGcCGGCGg- -3'
miRNA:   3'- -AGACG-------------UGGUGGUCCUUGCuGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 223805 0.77 0.537417
Target:  5'- gUCggcgGCgACCGCCGGGAcgACGACGGCgcGUCg -3'
miRNA:   3'- -AGa---CG-UGGUGGUCCU--UGCUGUCG--UAG- -5'
8970 5' -54.1 NC_002512.2 + 36986 0.76 0.547324
Target:  5'- cUCUGgACCGCCGcGGAgcGCGACGGCGc- -3'
miRNA:   3'- -AGACgUGGUGGU-CCU--UGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 99563 0.76 0.557289
Target:  5'- -gUGCGCUAUCGGGGgguACGACGGCGUg -3'
miRNA:   3'- agACGUGGUGGUCCU---UGCUGUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 4837 0.76 0.567305
Target:  5'- --cGCGCCGCCgAGGAGCG-CGGcCAUCg -3'
miRNA:   3'- agaCGUGGUGG-UCCUUGCuGUC-GUAG- -5'
8970 5' -54.1 NC_002512.2 + 73665 0.75 0.597599
Target:  5'- aUCcGUACCACgaCGGGAGCGcguGCGGCAUCg -3'
miRNA:   3'- -AGaCGUGGUG--GUCCUUGC---UGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 222691 0.75 0.607756
Target:  5'- aCUGCGCCcgGCaCGGGGAgGAguGCGUCg -3'
miRNA:   3'- aGACGUGG--UG-GUCCUUgCUguCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 167550 0.75 0.617932
Target:  5'- gCUGCGCCGCCAGGGGgugccCGuCGGCuUCu -3'
miRNA:   3'- aGACGUGGUGGUCCUU-----GCuGUCGuAG- -5'
8970 5' -54.1 NC_002512.2 + 61154 0.74 0.657646
Target:  5'- cCUGCACgGCCugcaAGGAGggcacgagcucccCGACGGCGUCg -3'
miRNA:   3'- aGACGUGgUGG----UCCUU-------------GCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 158555 0.74 0.678933
Target:  5'- cCUGCugguggGCCGCUccuGGcGCGACAGCGUCa -3'
miRNA:   3'- aGACG------UGGUGGu--CCuUGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 94746 0.72 0.767237
Target:  5'- --aGCAUCACCAGG-GCGGCccggcccucggAGCGUCg -3'
miRNA:   3'- agaCGUGGUGGUCCuUGCUG-----------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 119915 0.72 0.776574
Target:  5'- uUCUGCACCAagaUCucGAGCG-CGGCGUCg -3'
miRNA:   3'- -AGACGUGGU---GGucCUUGCuGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 181582 0.72 0.785783
Target:  5'- gUCUGCGgCGgCAGGGGCGGCGG-GUCc -3'
miRNA:   3'- -AGACGUgGUgGUCCUUGCUGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 207183 0.72 0.785783
Target:  5'- -aUGUGCCGCCGGG-GCGAC-GCGUUg -3'
miRNA:   3'- agACGUGGUGGUCCuUGCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 114067 0.72 0.785783
Target:  5'- -gUGCAgCACCGGGuGGC-ACAGCGUCu -3'
miRNA:   3'- agACGUgGUGGUCC-UUGcUGUCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.