miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 207183 0.72 0.785783
Target:  5'- -aUGUGCCGCCGGG-GCGAC-GCGUUg -3'
miRNA:   3'- agACGUGGUGGUCCuUGCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 109996 0.72 0.794855
Target:  5'- gCUGCACCcguucuuccGgCAGGugcGCGugAGCAUCg -3'
miRNA:   3'- aGACGUGG---------UgGUCCu--UGCugUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 54251 0.72 0.794855
Target:  5'- gUCcGCAgCGgCAGG-GCGGCGGCGUCg -3'
miRNA:   3'- -AGaCGUgGUgGUCCuUGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 125121 0.71 0.812553
Target:  5'- --cGCGCCGuCCGaccGGGACGACGGCGa- -3'
miRNA:   3'- agaCGUGGU-GGU---CCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 42916 0.71 0.812553
Target:  5'- --cGCACCGCCAGG-ACGGCccgggAGCGg- -3'
miRNA:   3'- agaCGUGGUGGUCCuUGCUG-----UCGUag -5'
8970 5' -54.1 NC_002512.2 + 10406 0.71 0.821163
Target:  5'- gUCUGaccCGCC-CCAGGGgcACGACcGCGUCg -3'
miRNA:   3'- -AGAC---GUGGuGGUCCU--UGCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 227679 0.71 0.821164
Target:  5'- --gGCGCCGCCGGcGAccgagacgACGACGGCGg- -3'
miRNA:   3'- agaCGUGGUGGUC-CU--------UGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 196770 0.71 0.821164
Target:  5'- aCUGCuacgACCugCAGGAG-GACuGCGUCu -3'
miRNA:   3'- aGACG----UGGugGUCCUUgCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 108423 0.71 0.829603
Target:  5'- gUCUGCGCCGCCcGGGGcCGGgGGCc-- -3'
miRNA:   3'- -AGACGUGGUGGuCCUU-GCUgUCGuag -5'
8970 5' -54.1 NC_002512.2 + 220620 0.71 0.837865
Target:  5'- -gUGCugUGCCGGGAcuGCGACGaCGUCg -3'
miRNA:   3'- agACGugGUGGUCCU--UGCUGUcGUAG- -5'
8970 5' -54.1 NC_002512.2 + 209293 0.71 0.837865
Target:  5'- --aGCGCUGCgucaAGGAgaACGGCGGCGUCa -3'
miRNA:   3'- agaCGUGGUGg---UCCU--UGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 203173 0.71 0.837865
Target:  5'- --cGCGCaCAUCAGGGACGcCAGCcagGUCa -3'
miRNA:   3'- agaCGUG-GUGGUCCUUGCuGUCG---UAG- -5'
8970 5' -54.1 NC_002512.2 + 10469 0.71 0.845941
Target:  5'- --cGcCGCCGCCccGGGCGugGGCGUCg -3'
miRNA:   3'- agaC-GUGGUGGucCUUGCugUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 118659 0.7 0.853825
Target:  5'- gCUG-ACgGCCGGGGACGuCAGCAa- -3'
miRNA:   3'- aGACgUGgUGGUCCUUGCuGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 166426 0.7 0.853825
Target:  5'- cCUGCccucuuccccGCCGuccuCCGGGGGCGACGGCGc- -3'
miRNA:   3'- aGACG----------UGGU----GGUCCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 219682 0.7 0.853825
Target:  5'- --cGCGCCGCCcgaggacgaggAGGAGCGuCGGCGcUCg -3'
miRNA:   3'- agaCGUGGUGG-----------UCCUUGCuGUCGU-AG- -5'
8970 5' -54.1 NC_002512.2 + 164215 0.7 0.86151
Target:  5'- cUCgGgGCCGCCGGGAAgGGCAucgGCAUg -3'
miRNA:   3'- -AGaCgUGGUGGUCCUUgCUGU---CGUAg -5'
8970 5' -54.1 NC_002512.2 + 126449 0.7 0.86151
Target:  5'- --cGCGCUcggACCGGGAcgacgcguuCGACGGCGUCu -3'
miRNA:   3'- agaCGUGG---UGGUCCUu--------GCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 11238 0.7 0.86151
Target:  5'- aUCcGCcuccguCCGCCGGGcGCGACAGgGUCc -3'
miRNA:   3'- -AGaCGu-----GGUGGUCCuUGCUGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 90682 0.7 0.86899
Target:  5'- --gGCgGCCaggGCCAGGuccuCGACGGCGUCg -3'
miRNA:   3'- agaCG-UGG---UGGUCCuu--GCUGUCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.