miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 35922 0.67 0.957821
Target:  5'- gUUGCGCCAUgucGGAGUGGCGGCAUg -3'
miRNA:   3'- aGACGUGGUGgu-CCUUGCUGUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 36168 0.67 0.967633
Target:  5'- -aUGC-CCACCAGGuuauuugGACGAC-GCGUg -3'
miRNA:   3'- agACGuGGUGGUCC-------UUGCUGuCGUAg -5'
8970 5' -54.1 NC_002512.2 + 36986 0.76 0.547324
Target:  5'- cUCUGgACCGCCGcGGAgcGCGACGGCGc- -3'
miRNA:   3'- -AGACgUGGUGGU-CCU--UGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 39149 0.67 0.96478
Target:  5'- uUCUGCGCCgacaugcggACCuGGGAUGAUgcugauaagcgGGCGUUg -3'
miRNA:   3'- -AGACGUGG---------UGGuCCUUGCUG-----------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 42916 0.71 0.812553
Target:  5'- --cGCACCGCCAGG-ACGGCccgggAGCGg- -3'
miRNA:   3'- agaCGUGGUGGUCCuUGCUG-----UCGUag -5'
8970 5' -54.1 NC_002512.2 + 45509 0.66 0.972839
Target:  5'- gUCgGUACCAUCAGGAcGgGACcgcaauccgaucggGGCGUCg -3'
miRNA:   3'- -AGaCGUGGUGGUCCU-UgCUG--------------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 45792 0.68 0.931513
Target:  5'- aCUGCAcCCGCCGGGGGCcguGCuGCGg- -3'
miRNA:   3'- aGACGU-GGUGGUCCUUGc--UGuCGUag -5'
8970 5' -54.1 NC_002512.2 + 50217 0.68 0.936481
Target:  5'- aUCgUGUACCACCuGGcGCuGACAagcGCGUCg -3'
miRNA:   3'- -AG-ACGUGGUGGuCCuUG-CUGU---CGUAG- -5'
8970 5' -54.1 NC_002512.2 + 54251 0.72 0.794855
Target:  5'- gUCcGCAgCGgCAGG-GCGGCGGCGUCg -3'
miRNA:   3'- -AGaCGUgGUgGUCCuUGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 57870 0.67 0.96794
Target:  5'- gCUGCcgGCCggACCGGcGACGGCGGCGa- -3'
miRNA:   3'- aGACG--UGG--UGGUCcUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 61154 0.74 0.657646
Target:  5'- cCUGCACgGCCugcaAGGAGggcacgagcucccCGACGGCGUCg -3'
miRNA:   3'- aGACGUGgUGG----UCCUU-------------GCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 67362 0.67 0.954011
Target:  5'- -gUGUACCAucuUCAGGGGCGAC-GCAa- -3'
miRNA:   3'- agACGUGGU---GGUCCUUGCUGuCGUag -5'
8970 5' -54.1 NC_002512.2 + 70301 0.68 0.94571
Target:  5'- uUCUGCGCCACCAaagccGGGu--ACAGgGUCc -3'
miRNA:   3'- -AGACGUGGUGGU-----CCUugcUGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 71325 0.68 0.926309
Target:  5'- gCUGUcgCGCCAGGAGCGGCccaccAGCAg- -3'
miRNA:   3'- aGACGugGUGGUCCUUGCUG-----UCGUag -5'
8970 5' -54.1 NC_002512.2 + 72095 0.66 0.970892
Target:  5'- cCUGCacACCGCCcGGuucuugauGCGACAGCu-- -3'
miRNA:   3'- aGACG--UGGUGGuCCu-------UGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 73528 0.68 0.931513
Target:  5'- --gGCGCCgACguGGGugGACAgguGCAUCu -3'
miRNA:   3'- agaCGUGG-UGguCCUugCUGU---CGUAG- -5'
8970 5' -54.1 NC_002512.2 + 73665 0.75 0.597599
Target:  5'- aUCcGUACCACgaCGGGAGCGcguGCGGCAUCg -3'
miRNA:   3'- -AGaCGUGGUG--GUCCUUGC---UGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 74006 0.7 0.890143
Target:  5'- --cGCGCCcGCCgucGGGGACGAaCAGCGUg -3'
miRNA:   3'- agaCGUGG-UGG---UCCUUGCU-GUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 75128 0.66 0.977882
Target:  5'- gCUGCuggugguggucaccGCCACCGGGGGCGGauucccGUGUCc -3'
miRNA:   3'- aGACG--------------UGGUGGUCCUUGCUgu----CGUAG- -5'
8970 5' -54.1 NC_002512.2 + 75734 0.67 0.957821
Target:  5'- --gGUACCGCCuaccGGAAgGACAGUAc- -3'
miRNA:   3'- agaCGUGGUGGu---CCUUgCUGUCGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.