miRNA display CGI


Results 1 - 20 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 119212 0.69 0.909276
Target:  5'- gCUGCGCgagCACCAGGAcCGGCuGCccgcgGUCg -3'
miRNA:   3'- aGACGUG---GUGGUCCUuGCUGuCG-----UAG- -5'
8970 5' -54.1 NC_002512.2 + 10469 0.71 0.845941
Target:  5'- --cGcCGCCGCCccGGGCGugGGCGUCg -3'
miRNA:   3'- agaC-GUGGUGGucCUUGCugUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 11238 0.7 0.86151
Target:  5'- aUCcGCcuccguCCGCCGGGcGCGACAGgGUCc -3'
miRNA:   3'- -AGaCGu-----GGUGGUCCuUGCUGUCgUAG- -5'
8970 5' -54.1 NC_002512.2 + 126449 0.7 0.86151
Target:  5'- --cGCGCUcggACCGGGAcgacgcguuCGACGGCGUCu -3'
miRNA:   3'- agaCGUGG---UGGUCCUu--------GCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 9330 0.7 0.883311
Target:  5'- --cGCACgGCCAGGuaGACGGCGGUg-- -3'
miRNA:   3'- agaCGUGgUGGUCC--UUGCUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 191404 0.7 0.890143
Target:  5'- cUUGaggaCACCAGGAugG-CAGCAUCc -3'
miRNA:   3'- aGACgug-GUGGUCCUugCuGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 74006 0.7 0.890143
Target:  5'- --cGCGCCcGCCgucGGGGACGAaCAGCGUg -3'
miRNA:   3'- agaCGUGG-UGG---UCCUUGCU-GUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 120941 0.69 0.8961
Target:  5'- --cGCA-CACCAGGAACGACaccgccaGGCAgaUCa -3'
miRNA:   3'- agaCGUgGUGGUCCUUGCUG-------UCGU--AG- -5'
8970 5' -54.1 NC_002512.2 + 224074 0.69 0.89675
Target:  5'- --cGaCGCCGCCGaacGGGGCGGCGGCGg- -3'
miRNA:   3'- agaC-GUGGUGGU---CCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 10406 0.71 0.821163
Target:  5'- gUCUGaccCGCC-CCAGGGgcACGACcGCGUCg -3'
miRNA:   3'- -AGAC---GUGGuGGUCCU--UGCUGuCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 42916 0.71 0.812553
Target:  5'- --cGCACCGCCAGG-ACGGCccgggAGCGg- -3'
miRNA:   3'- agaCGUGGUGGUCCuUGCUG-----UCGUag -5'
8970 5' -54.1 NC_002512.2 + 54251 0.72 0.794855
Target:  5'- gUCcGCAgCGgCAGG-GCGGCGGCGUCg -3'
miRNA:   3'- -AGaCGUgGUgGUCCuUGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 2026 0.77 0.498463
Target:  5'- --gGCACCAggAGGAGCGACAGCAg- -3'
miRNA:   3'- agaCGUGGUggUCCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 129964 0.77 0.52659
Target:  5'- gUCUGCgacgcgaucgaacACCGCCGGGAGCGcCGGCGg- -3'
miRNA:   3'- -AGACG-------------UGGUGGUCCUUGCuGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 36986 0.76 0.547324
Target:  5'- cUCUGgACCGCCGcGGAgcGCGACGGCGc- -3'
miRNA:   3'- -AGACgUGGUGGU-CCU--UGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 99563 0.76 0.557289
Target:  5'- -gUGCGCUAUCGGGGgguACGACGGCGUg -3'
miRNA:   3'- agACGUGGUGGUCCU---UGCUGUCGUAg -5'
8970 5' -54.1 NC_002512.2 + 4837 0.76 0.567305
Target:  5'- --cGCGCCGCCgAGGAGCG-CGGcCAUCg -3'
miRNA:   3'- agaCGUGGUGG-UCCUUGCuGUC-GUAG- -5'
8970 5' -54.1 NC_002512.2 + 61154 0.74 0.657646
Target:  5'- cCUGCACgGCCugcaAGGAGggcacgagcucccCGACGGCGUCg -3'
miRNA:   3'- aGACGUGgUGG----UCCUU-------------GCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 94746 0.72 0.767237
Target:  5'- --aGCAUCACCAGG-GCGGCccggcccucggAGCGUCg -3'
miRNA:   3'- agaCGUGGUGGUCCuUGCUG-----------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 114067 0.72 0.785783
Target:  5'- -gUGCAgCACCGGGuGGC-ACAGCGUCu -3'
miRNA:   3'- agACGUgGUGGUCC-UUGcUGUCGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.