Results 1 - 20 of 191 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 197229 | 0.65 | 0.982592 |
Target: 5'- aCUGCcucaaccgcaucuACCGCCuGGc-CGACAGCuUCa -3' miRNA: 3'- aGACG-------------UGGUGGuCCuuGCUGUCGuAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 175645 | 0.66 | 0.973644 |
Target: 5'- cCUGCGCUGC--GGAcguGCGAguGCGUCu -3' miRNA: 3'- aGACGUGGUGguCCU---UGCUguCGUAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 225790 | 0.66 | 0.973644 |
Target: 5'- gCUGCGCCgGCCGGGccGCgGGCGGCc-- -3' miRNA: 3'- aGACGUGG-UGGUCCu-UG-CUGUCGuag -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 202895 | 1.11 | 0.004453 |
Target: 5'- gUCUGCACCACCAGGAACGACAGCAUCa -3' miRNA: 3'- -AGACGUGGUGGUCCUUGCUGUCGUAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 219404 | 0.66 | 0.980128 |
Target: 5'- gUCgGC-CCGCCGcgacgcccacgcccGGGGCGGCGGCGg- -3' miRNA: 3'- -AGaCGuGGUGGU--------------CCUUGCUGUCGUag -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 168446 | 0.66 | 0.979473 |
Target: 5'- --gGcCACCAgCAGGAucugcucuaugcacuGCGACGGCAc- -3' miRNA: 3'- agaC-GUGGUgGUCCU---------------UGCUGUCGUag -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 192603 | 0.66 | 0.978575 |
Target: 5'- gCUGCGgCGCgcgCGGcGGGCGACGGCGg- -3' miRNA: 3'- aGACGUgGUG---GUC-CUUGCUGUCGUag -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 184880 | 0.66 | 0.978575 |
Target: 5'- gCUGCuacuGCCACgGGGucagcgGGCGGCGGCGc- -3' miRNA: 3'- aGACG----UGGUGgUCC------UUGCUGUCGUag -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 206191 | 0.66 | 0.978575 |
Target: 5'- --gGCACggaCACCAGGAagcaGCGGCGGUg-- -3' miRNA: 3'- agaCGUG---GUGGUCCU----UGCUGUCGuag -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 138170 | 0.66 | 0.976203 |
Target: 5'- gUCcGCAcCCGCCGGGcuGCGuguGCAUCg -3' miRNA: 3'- -AGaCGU-GGUGGUCCu-UGCuguCGUAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 75128 | 0.66 | 0.977882 |
Target: 5'- gCUGCuggugguggucaccGCCACCGGGGGCGGauucccGUGUCc -3' miRNA: 3'- aGACG--------------UGGUGGUCCUUGCUgu----CGUAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 90468 | 0.66 | 0.978575 |
Target: 5'- gCUGCggguccccgAUCACCGGGGcguccuCGACGGgAUCg -3' miRNA: 3'- aGACG---------UGGUGGUCCUu-----GCUGUCgUAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 122880 | 0.66 | 0.980767 |
Target: 5'- --cGUcgGCCGCCuaccgagaGGGAgacgacgaggACGACGGCAUCu -3' miRNA: 3'- agaCG--UGGUGG--------UCCU----------UGCUGUCGUAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 166623 | 0.66 | 0.976203 |
Target: 5'- gCUcCGCguCCGGGAACGuCGGCuAUCa -3' miRNA: 3'- aGAcGUGguGGUCCUUGCuGUCG-UAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 185560 | 0.66 | 0.980767 |
Target: 5'- --gGCgugGCCgucgaggggACCuGGAACGGCAGCAUg -3' miRNA: 3'- agaCG---UGG---------UGGuCCUUGCUGUCGUAg -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 132583 | 0.66 | 0.978575 |
Target: 5'- --gGCGCgGCCAGGGguuCGGCgAGCAg- -3' miRNA: 3'- agaCGUGgUGGUCCUu--GCUG-UCGUag -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 148425 | 0.66 | 0.976203 |
Target: 5'- cCUGCgggACCGCCGGGGgaggACGGgGGCc-- -3' miRNA: 3'- aGACG---UGGUGGUCCU----UGCUgUCGuag -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 227456 | 0.66 | 0.973644 |
Target: 5'- --cGCGCUgccgggggagagGCCGGGGGCGGcCGGCcgCg -3' miRNA: 3'- agaCGUGG------------UGGUCCUUGCU-GUCGuaG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 128876 | 0.66 | 0.980767 |
Target: 5'- gCUGCGCCugCugAGGGACGAgacgggccUGGCgAUCc -3' miRNA: 3'- aGACGUGGugG--UCCUUGCU--------GUCG-UAG- -5' |
|||||||
8970 | 5' | -54.1 | NC_002512.2 | + | 200158 | 0.66 | 0.978575 |
Target: 5'- --cGCGCCGCCAcGGuaggGCGACAcgGUCa -3' miRNA: 3'- agaCGUGGUGGU-CCu---UGCUGUcgUAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home