miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8970 5' -54.1 NC_002512.2 + 229574 0.68 0.94571
Target:  5'- --aGCGCgCGCCGGGAGgGACGGgGg- -3'
miRNA:   3'- agaCGUG-GUGGUCCUUgCUGUCgUag -5'
8970 5' -54.1 NC_002512.2 + 228088 0.7 0.890143
Target:  5'- gCUGCACacggUCGGGAGCGAggagGGCGUCg -3'
miRNA:   3'- aGACGUGgu--GGUCCUUGCUg---UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 227679 0.71 0.821164
Target:  5'- --gGCGCCGCCGGcGAccgagacgACGACGGCGg- -3'
miRNA:   3'- agaCGUGGUGGUC-CU--------UGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 227456 0.66 0.973644
Target:  5'- --cGCGCUgccgggggagagGCCGGGGGCGGcCGGCcgCg -3'
miRNA:   3'- agaCGUGG------------UGGUCCUUGCU-GUCGuaG- -5'
8970 5' -54.1 NC_002512.2 + 226682 0.69 0.920867
Target:  5'- cUCUG-AgCGCCGGGccgucgcccGCGGCGGCGUCg -3'
miRNA:   3'- -AGACgUgGUGGUCCu--------UGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 225790 0.66 0.973644
Target:  5'- gCUGCGCCgGCCGGGccGCgGGCGGCc-- -3'
miRNA:   3'- aGACGUGG-UGGUCCu-UG-CUGUCGuag -5'
8970 5' -54.1 NC_002512.2 + 225256 0.7 0.890143
Target:  5'- -gUGCuccuucuCCGCCAGGAggGCGuccuCGGCGUCc -3'
miRNA:   3'- agACGu------GGUGGUCCU--UGCu---GUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 224915 0.67 0.957821
Target:  5'- gUCUGCACCuccgucgcggggACCGGGucCGugcCGGUGUCg -3'
miRNA:   3'- -AGACGUGG------------UGGUCCuuGCu--GUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 224074 0.69 0.89675
Target:  5'- --cGaCGCCGCCGaacGGGGCGGCGGCGg- -3'
miRNA:   3'- agaC-GUGGUGGU---CCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 224043 0.77 0.50809
Target:  5'- aCgGgGCCGCCGGGGACGACucgucgGGCGUCu -3'
miRNA:   3'- aGaCgUGGUGGUCCUUGCUG------UCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 223805 0.77 0.537417
Target:  5'- gUCggcgGCgACCGCCGGGAcgACGACGGCgcGUCg -3'
miRNA:   3'- -AGa---CG-UGGUGGUCCU--UGCUGUCG--UAG- -5'
8970 5' -54.1 NC_002512.2 + 222691 0.75 0.607756
Target:  5'- aCUGCGCCcgGCaCGGGGAgGAguGCGUCg -3'
miRNA:   3'- aGACGUGG--UG-GUCCUUgCUguCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 222405 0.67 0.96478
Target:  5'- --aGCGCCGCggcuucggCGGGGGcCGGCAGCcgCg -3'
miRNA:   3'- agaCGUGGUG--------GUCCUU-GCUGUCGuaG- -5'
8970 5' -54.1 NC_002512.2 + 222022 0.68 0.936481
Target:  5'- --cGUACCACaa-GAcCGACAGCGUCa -3'
miRNA:   3'- agaCGUGGUGgucCUuGCUGUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 221305 0.67 0.957821
Target:  5'- aUCgUGUACCGCCuuGAAUGACcuGUAUCg -3'
miRNA:   3'- -AG-ACGUGGUGGucCUUGCUGu-CGUAG- -5'
8970 5' -54.1 NC_002512.2 + 220620 0.71 0.837865
Target:  5'- -gUGCugUGCCGGGAcuGCGACGaCGUCg -3'
miRNA:   3'- agACGugGUGGUCCU--UGCUGUcGUAG- -5'
8970 5' -54.1 NC_002512.2 + 220514 0.66 0.973644
Target:  5'- cCUGCGUCGCCcgggaccuggAGGAgcugcugcGCGAgGGCGUCa -3'
miRNA:   3'- aGACGUGGUGG----------UCCU--------UGCUgUCGUAG- -5'
8970 5' -54.1 NC_002512.2 + 219682 0.7 0.853825
Target:  5'- --cGCGCCGCCcgaggacgaggAGGAGCGuCGGCGcUCg -3'
miRNA:   3'- agaCGUGGUGG-----------UCCUUGCuGUCGU-AG- -5'
8970 5' -54.1 NC_002512.2 + 219404 0.66 0.980128
Target:  5'- gUCgGC-CCGCCGcgacgcccacgcccGGGGCGGCGGCGg- -3'
miRNA:   3'- -AGaCGuGGUGGU--------------CCUUGCUGUCGUag -5'
8970 5' -54.1 NC_002512.2 + 219209 0.68 0.931513
Target:  5'- gCUGCACUGCCGGGccggccucGGCGAgguCGGgAUCg -3'
miRNA:   3'- aGACGUGGUGGUCC--------UUGCU---GUCgUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.