miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8971 5' -56.4 NC_002512.2 + 201187 1.1 0.003764
Target:  5'- cCCUCGCUGCACCGCUUCGUCAGCUCGu -3'
miRNA:   3'- -GGAGCGACGUGGCGAAGCAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 197463 0.77 0.426234
Target:  5'- cCCUCGC----CCGCUUCGUCAGCUuCGg -3'
miRNA:   3'- -GGAGCGacguGGCGAAGCAGUCGA-GC- -5'
8971 5' -56.4 NC_002512.2 + 113655 0.75 0.512671
Target:  5'- gCCUCGUgguucuccgggggGCGCaC-CUUCGUCAGCUCGa -3'
miRNA:   3'- -GGAGCGa------------CGUG-GcGAAGCAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 156570 0.74 0.58387
Target:  5'- gCCU-GCUGCGCucggugCGCUUCGUCAGCg-- -3'
miRNA:   3'- -GGAgCGACGUG------GCGAAGCAGUCGagc -5'
8971 5' -56.4 NC_002512.2 + 185700 0.74 0.603512
Target:  5'- gCCUCGCUGCgcgaccaccGCCGCUUCGauaccaAGCUgCGc -3'
miRNA:   3'- -GGAGCGACG---------UGGCGAAGCag----UCGA-GC- -5'
8971 5' -56.4 NC_002512.2 + 155166 0.74 0.613366
Target:  5'- gUCUCGCU-CGCuCGCggcgUCGUgAGCUCGg -3'
miRNA:   3'- -GGAGCGAcGUG-GCGa---AGCAgUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 145345 0.73 0.67252
Target:  5'- gCCUCGCcGCGCCGCccgaCGcCGGCUaCGa -3'
miRNA:   3'- -GGAGCGaCGUGGCGaa--GCaGUCGA-GC- -5'
8971 5' -56.4 NC_002512.2 + 214214 0.72 0.720077
Target:  5'- gCC-CGCUGCcccgggacgucagGCgGC-UCGUCGGCUCGc -3'
miRNA:   3'- -GGaGCGACG-------------UGgCGaAGCAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 143736 0.71 0.749355
Target:  5'- gCCUCGgagGCgGCCGCggCGUCGGCUUc -3'
miRNA:   3'- -GGAGCga-CG-UGGCGaaGCAGUCGAGc -5'
8971 5' -56.4 NC_002512.2 + 72857 0.71 0.749355
Target:  5'- uCCUCGCUccGgGCCGCgucgccgUUGUCgcggGGCUCGg -3'
miRNA:   3'- -GGAGCGA--CgUGGCGa------AGCAG----UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 135345 0.71 0.775914
Target:  5'- gCCggggUGCUGCuggccgucgACCGCUUCGUCcugggcgGGUUCGa -3'
miRNA:   3'- -GGa---GCGACG---------UGGCGAAGCAG-------UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 222446 0.7 0.785736
Target:  5'- gCgUCGCgUGCGCCGUUcUCGUC-GUUCGa -3'
miRNA:   3'- -GgAGCG-ACGUGGCGA-AGCAGuCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 75081 0.7 0.785736
Target:  5'- aCgUCGagGCGCCGUUUCGggGGCUCGa -3'
miRNA:   3'- -GgAGCgaCGUGGCGAAGCagUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 106625 0.7 0.820064
Target:  5'- uCCUCcgacauGCgGCGCCGg-UCGUCgAGCUCGa -3'
miRNA:   3'- -GGAG------CGaCGUGGCgaAGCAG-UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 31230 0.7 0.820064
Target:  5'- gCCaCGCUGCugCGUUUCGUgAGggCGc -3'
miRNA:   3'- -GGaGCGACGugGCGAAGCAgUCgaGC- -5'
8971 5' -56.4 NC_002512.2 + 165299 0.7 0.828267
Target:  5'- aUCUCGCcgcGCGCCGCUcgUCGcugugCGGCUaCGg -3'
miRNA:   3'- -GGAGCGa--CGUGGCGA--AGCa----GUCGA-GC- -5'
8971 5' -56.4 NC_002512.2 + 202101 0.7 0.828267
Target:  5'- aCCUCGUccgACCGCguccUCGUCAGCUgGu -3'
miRNA:   3'- -GGAGCGacgUGGCGa---AGCAGUCGAgC- -5'
8971 5' -56.4 NC_002512.2 + 165921 0.7 0.828267
Target:  5'- aUCUC-CUGCACCGCaugUGUCGGgUCu -3'
miRNA:   3'- -GGAGcGACGUGGCGaa-GCAGUCgAGc -5'
8971 5' -56.4 NC_002512.2 + 21299 0.69 0.836304
Target:  5'- aCCUCGUcccgGaC-CCGCUgcgCGUCgAGCUCGg -3'
miRNA:   3'- -GGAGCGa---C-GuGGCGAa--GCAG-UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 187758 0.69 0.844168
Target:  5'- ---aGCUGCGuuGCgUCGUCcGCUCGc -3'
miRNA:   3'- ggagCGACGUggCGaAGCAGuCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.