miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8971 5' -56.4 NC_002512.2 + 5983 0.66 0.95089
Target:  5'- cUCUCGCcGCGCCGCUcccgcuccuccUCcUCGGcCUCc -3'
miRNA:   3'- -GGAGCGaCGUGGCGA-----------AGcAGUC-GAGc -5'
8971 5' -56.4 NC_002512.2 + 15549 0.67 0.933256
Target:  5'- cUCUCGCUGaggagGCCGgagUCGUCGgccuGCUCGu -3'
miRNA:   3'- -GGAGCGACg----UGGCga-AGCAGU----CGAGC- -5'
8971 5' -56.4 NC_002512.2 + 21299 0.69 0.836304
Target:  5'- aCCUCGUcccgGaC-CCGCUgcgCGUCgAGCUCGg -3'
miRNA:   3'- -GGAGCGa---C-GuGGCGAa--GCAG-UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 24913 0.67 0.933256
Target:  5'- cCC-CGUcGC-CCGCggCGUCgGGCUCGg -3'
miRNA:   3'- -GGaGCGaCGuGGCGaaGCAG-UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 26514 0.68 0.900166
Target:  5'- uCCUgaUGCUGagcaACCGCggccuggUCGgCAGCUCGc -3'
miRNA:   3'- -GGA--GCGACg---UGGCGa------AGCaGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 31230 0.7 0.820064
Target:  5'- gCCaCGCUGCugCGUUUCGUgAGggCGc -3'
miRNA:   3'- -GGaGCGACGugGCGAAGCAgUCgaGC- -5'
8971 5' -56.4 NC_002512.2 + 72857 0.71 0.749355
Target:  5'- uCCUCGCUccGgGCCGCgucgccgUUGUCgcggGGCUCGg -3'
miRNA:   3'- -GGAGCGA--CgUGGCGa------AGCAG----UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 75081 0.7 0.785736
Target:  5'- aCgUCGagGCGCCGUUUCGggGGCUCGa -3'
miRNA:   3'- -GgAGCgaCGUGGCGAAGCagUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 78680 0.66 0.954756
Target:  5'- gCUCGgaGCcuaaguCCGCUUCGgacuuaGGCUCc -3'
miRNA:   3'- gGAGCgaCGu-----GGCGAAGCag----UCGAGc -5'
8971 5' -56.4 NC_002512.2 + 80164 0.69 0.866661
Target:  5'- uCCUCGCUGuCGCCGU--CGUC-GCUg- -3'
miRNA:   3'- -GGAGCGAC-GUGGCGaaGCAGuCGAgc -5'
8971 5' -56.4 NC_002512.2 + 82666 0.67 0.928296
Target:  5'- cCCUCGCUGUuuUCGCg--GUCccGCUCGg -3'
miRNA:   3'- -GGAGCGACGu-GGCGaagCAGu-CGAGC- -5'
8971 5' -56.4 NC_002512.2 + 89301 0.68 0.908598
Target:  5'- aCCUCGCaGCGuCCGCccucCGUCucgaccaggucggagAGCUCGu -3'
miRNA:   3'- -GGAGCGaCGU-GGCGaa--GCAG---------------UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 98269 0.66 0.95089
Target:  5'- uCCUUGCccccGCGCCGCUcguccccgUCGUCcucCUCGu -3'
miRNA:   3'- -GGAGCGa---CGUGGCGA--------AGCAGuc-GAGC- -5'
8971 5' -56.4 NC_002512.2 + 103617 0.67 0.91208
Target:  5'- gCCUCcCgGUACCGCUggagGUCGGCUuCGg -3'
miRNA:   3'- -GGAGcGaCGUGGCGAag--CAGUCGA-GC- -5'
8971 5' -56.4 NC_002512.2 + 106625 0.7 0.820064
Target:  5'- uCCUCcgacauGCgGCGCCGg-UCGUCgAGCUCGa -3'
miRNA:   3'- -GGAG------CGaCGUGGCgaAGCAG-UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 111388 0.67 0.917707
Target:  5'- aCCUCGUaGCcgucCCGCccCGgCAGCUCGg -3'
miRNA:   3'- -GGAGCGaCGu---GGCGaaGCaGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 112179 0.66 0.954756
Target:  5'- -gUCGCUGCgcacccGCCGCaggugCGccacgCAGCUCGu -3'
miRNA:   3'- ggAGCGACG------UGGCGaa---GCa----GUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 112893 0.68 0.887388
Target:  5'- uUCUCGUcgGuCGCCGCgucgCGgacCAGCUCGa -3'
miRNA:   3'- -GGAGCGa-C-GUGGCGaa--GCa--GUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 113655 0.75 0.512671
Target:  5'- gCCUCGUgguucuccgggggGCGCaC-CUUCGUCAGCUCGa -3'
miRNA:   3'- -GGAGCGa------------CGUG-GcGAAGCAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 118275 0.66 0.953618
Target:  5'- gCCUCGCUG-GCCGCccUCGUCcggaggaagauccgGGC-CGa -3'
miRNA:   3'- -GGAGCGACgUGGCGa-AGCAG--------------UCGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.