miRNA display CGI


Results 21 - 40 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8971 5' -56.4 NC_002512.2 + 120898 0.69 0.859352
Target:  5'- uCCUcCGUcGC-CCGCUUCuUCAGUUCGc -3'
miRNA:   3'- -GGA-GCGaCGuGGCGAAGcAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 124664 0.69 0.859352
Target:  5'- --aCGCUGUACgC-CUUCGcgcUCAGCUCGg -3'
miRNA:   3'- ggaGCGACGUG-GcGAAGC---AGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 126010 0.68 0.880684
Target:  5'- gUCUCGUUGCACgCGU-UCGUCaggcccAGCUCc -3'
miRNA:   3'- -GGAGCGACGUG-GCGaAGCAG------UCGAGc -5'
8971 5' -56.4 NC_002512.2 + 135345 0.71 0.775914
Target:  5'- gCCggggUGCUGCuggccgucgACCGCUUCGUCcugggcgGGUUCGa -3'
miRNA:   3'- -GGa---GCGACG---------UGGCGAAGCAG-------UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 142181 0.67 0.937994
Target:  5'- gUCUCGCgGCgucuccgcgucGCCGCgcguccCGUCGGuCUCGa -3'
miRNA:   3'- -GGAGCGaCG-----------UGGCGaa----GCAGUC-GAGC- -5'
8971 5' -56.4 NC_002512.2 + 142740 0.68 0.893884
Target:  5'- gUUCGCguUGC-CCGCcUUGUCcAGCUCGu -3'
miRNA:   3'- gGAGCG--ACGuGGCGaAGCAG-UCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 143736 0.71 0.749355
Target:  5'- gCCUCGgagGCgGCCGCggCGUCGGCUUc -3'
miRNA:   3'- -GGAGCga-CG-UGGCGaaGCAGUCGAGc -5'
8971 5' -56.4 NC_002512.2 + 145345 0.73 0.67252
Target:  5'- gCCUCGCcGCGCCGCccgaCGcCGGCUaCGa -3'
miRNA:   3'- -GGAGCGaCGUGGCGaa--GCaGUCGA-GC- -5'
8971 5' -56.4 NC_002512.2 + 148691 0.68 0.887388
Target:  5'- cCCUCGU--CGCCGCUucgcccggaUCGUCGGCg-- -3'
miRNA:   3'- -GGAGCGacGUGGCGA---------AGCAGUCGagc -5'
8971 5' -56.4 NC_002512.2 + 155166 0.74 0.613366
Target:  5'- gUCUCGCU-CGCuCGCggcgUCGUgAGCUCGg -3'
miRNA:   3'- -GGAGCGAcGUG-GCGa---AGCAgUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 156570 0.74 0.58387
Target:  5'- gCCU-GCUGCGCucggugCGCUUCGUCAGCg-- -3'
miRNA:   3'- -GGAgCGACGUG------GCGAAGCAGUCGagc -5'
8971 5' -56.4 NC_002512.2 + 165299 0.7 0.828267
Target:  5'- aUCUCGCcgcGCGCCGCUcgUCGcugugCGGCUaCGg -3'
miRNA:   3'- -GGAGCGa--CGUGGCGA--AGCa----GUCGA-GC- -5'
8971 5' -56.4 NC_002512.2 + 165921 0.7 0.828267
Target:  5'- aUCUC-CUGCACCGCaugUGUCGGgUCu -3'
miRNA:   3'- -GGAGcGACGUGGCGaa-GCAGUCgAGc -5'
8971 5' -56.4 NC_002512.2 + 167549 0.67 0.922049
Target:  5'- ---aGCUGCGCCGCcagggggugccCGUCGGCUUc -3'
miRNA:   3'- ggagCGACGUGGCGaa---------GCAGUCGAGc -5'
8971 5' -56.4 NC_002512.2 + 171938 0.67 0.937994
Target:  5'- gCC-CGCcGCGCCGCgccCGUCuaucucccGCUCGc -3'
miRNA:   3'- -GGaGCGaCGUGGCGaa-GCAGu-------CGAGC- -5'
8971 5' -56.4 NC_002512.2 + 174011 0.66 0.94681
Target:  5'- cCUUCGCaGCGCCGCguacaUGUCcGcCUCGa -3'
miRNA:   3'- -GGAGCGaCGUGGCGaa---GCAGuC-GAGC- -5'
8971 5' -56.4 NC_002512.2 + 176583 0.68 0.906232
Target:  5'- ---gGCcaGCACCGUgucgcUCGUCAGCUUGg -3'
miRNA:   3'- ggagCGa-CGUGGCGa----AGCAGUCGAGC- -5'
8971 5' -56.4 NC_002512.2 + 178127 0.67 0.928296
Target:  5'- uCCUCGCU-CAUCGU--CGUCAGCg-- -3'
miRNA:   3'- -GGAGCGAcGUGGCGaaGCAGUCGagc -5'
8971 5' -56.4 NC_002512.2 + 180303 0.66 0.95841
Target:  5'- cCCUCGacagGCGCaGCggcgUCGUCAGgUCc -3'
miRNA:   3'- -GGAGCga--CGUGgCGa---AGCAGUCgAGc -5'
8971 5' -56.4 NC_002512.2 + 185700 0.74 0.603512
Target:  5'- gCCUCGCUGCgcgaccaccGCCGCUUCGauaccaAGCUgCGc -3'
miRNA:   3'- -GGAGCGACG---------UGGCGAAGCag----UCGA-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.