Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8971 | 5' | -56.4 | NC_002512.2 | + | 120898 | 0.69 | 0.859352 |
Target: 5'- uCCUcCGUcGC-CCGCUUCuUCAGUUCGc -3' miRNA: 3'- -GGA-GCGaCGuGGCGAAGcAGUCGAGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 223627 | 0.67 | 0.937994 |
Target: 5'- -gUCGCUgGUGCUGCUcggcgggcUCGUCAuGCUCu -3' miRNA: 3'- ggAGCGA-CGUGGCGA--------AGCAGU-CGAGc -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 209559 | 0.67 | 0.933256 |
Target: 5'- gUCUCGgaGCGCgGUcUCGaCGGCUCc -3' miRNA: 3'- -GGAGCgaCGUGgCGaAGCaGUCGAGc -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 217970 | 0.67 | 0.928296 |
Target: 5'- aUUUGCcgaGCGCCGCUUCcUCGGCagcuUCGg -3' miRNA: 3'- gGAGCGa--CGUGGCGAAGcAGUCG----AGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 178127 | 0.67 | 0.928296 |
Target: 5'- uCCUCGCU-CAUCGU--CGUCAGCg-- -3' miRNA: 3'- -GGAGCGAcGUGGCGaaGCAGUCGagc -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 167549 | 0.67 | 0.922049 |
Target: 5'- ---aGCUGCGCCGCcagggggugccCGUCGGCUUc -3' miRNA: 3'- ggagCGACGUGGCGaa---------GCAGUCGAGc -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 111388 | 0.67 | 0.917707 |
Target: 5'- aCCUCGUaGCcgucCCGCccCGgCAGCUCGg -3' miRNA: 3'- -GGAGCGaCGu---GGCGaaGCaGUCGAGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 219606 | 0.67 | 0.91208 |
Target: 5'- aCUCGCUGC-CCGgCUUC-UCGGgcaUCGg -3' miRNA: 3'- gGAGCGACGuGGC-GAAGcAGUCg--AGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 103617 | 0.67 | 0.91208 |
Target: 5'- gCCUCcCgGUACCGCUggagGUCGGCUuCGg -3' miRNA: 3'- -GGAGcGaCGUGGCGAag--CAGUCGA-GC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 171938 | 0.67 | 0.937994 |
Target: 5'- gCC-CGCcGCGCCGCgccCGUCuaucucccGCUCGc -3' miRNA: 3'- -GGaGCGaCGUGGCGaa-GCAGu-------CGAGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 199577 | 0.66 | 0.942512 |
Target: 5'- aCUCGUgcgGUACCGCgggUCGUCGacGCg-- -3' miRNA: 3'- gGAGCGa--CGUGGCGa--AGCAGU--CGagc -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 219205 | 0.66 | 0.94681 |
Target: 5'- aCC-CGCUGCACUGC--CGggcCGGcCUCGg -3' miRNA: 3'- -GGaGCGACGUGGCGaaGCa--GUC-GAGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 201187 | 1.1 | 0.003764 |
Target: 5'- cCCUCGCUGCACCGCUUCGUCAGCUCGu -3' miRNA: 3'- -GGAGCGACGUGGCGAAGCAGUCGAGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 186391 | 0.66 | 0.95841 |
Target: 5'- aCCgacCGCUGCAgcuCCGCgUCcUCGGCUUc -3' miRNA: 3'- -GGa--GCGACGU---GGCGaAGcAGUCGAGc -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 216254 | 0.66 | 0.958054 |
Target: 5'- -gUCGUcaucaggUGCGCCGCccgcacCGcCAGCUCGg -3' miRNA: 3'- ggAGCG-------ACGUGGCGaa----GCaGUCGAGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 193801 | 0.66 | 0.954756 |
Target: 5'- cCCUgGCccauuggucGCGCCGCUUCGgggUCGGCg-- -3' miRNA: 3'- -GGAgCGa--------CGUGGCGAAGC---AGUCGagc -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 98269 | 0.66 | 0.95089 |
Target: 5'- uCCUUGCccccGCGCCGCUcguccccgUCGUCcucCUCGu -3' miRNA: 3'- -GGAGCGa---CGUGGCGA--------AGCAGuc-GAGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 186636 | 0.66 | 0.95089 |
Target: 5'- gCUCGCUGC-CCGCgggccacUGggccCAGCUCc -3' miRNA: 3'- gGAGCGACGuGGCGaa-----GCa---GUCGAGc -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 217587 | 0.66 | 0.94681 |
Target: 5'- uCCg-GCgGCGCCGCcucgggggUCGUCGGCgacUCGg -3' miRNA: 3'- -GGagCGaCGUGGCGa-------AGCAGUCG---AGC- -5' |
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8971 | 5' | -56.4 | NC_002512.2 | + | 174011 | 0.66 | 0.94681 |
Target: 5'- cCUUCGCaGCGCCGCguacaUGUCcGcCUCGa -3' miRNA: 3'- -GGAGCGaCGUGGCGaa---GCAGuC-GAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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