miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 62975 0.69 0.983556
Target:  5'- gCCUUCauggCGU-CGCGGAcCAGCUUcCGCUg -3'
miRNA:   3'- -GGAAGa---GCAgGCGCUU-GUCGAA-GUGG- -5'
8972 3' -51.5 NC_002512.2 + 65830 0.67 0.995524
Target:  5'- cCCggaUCUCG-CCGCGAgaguACAGCUcCAg- -3'
miRNA:   3'- -GGa--AGAGCaGGCGCU----UGUCGAaGUgg -5'
8972 3' -51.5 NC_002512.2 + 68847 0.69 0.983556
Target:  5'- --aUCgugCGUCCGCaGGGCGGg-UCGCCa -3'
miRNA:   3'- ggaAGa--GCAGGCG-CUUGUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 69427 0.71 0.951923
Target:  5'- ---gCUCGUgccCCGCGAAaCGGCcUUCGCCc -3'
miRNA:   3'- ggaaGAGCA---GGCGCUU-GUCG-AAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 69789 0.66 0.997615
Target:  5'- aCCgUCUgggCGUCCGUaucCAGCUgCACCa -3'
miRNA:   3'- -GGaAGA---GCAGGCGcuuGUCGAaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 70242 0.74 0.858301
Target:  5'- gCCggcgCUCGUCUGCGAGaaucGCgggUCACCu -3'
miRNA:   3'- -GGaa--GAGCAGGCGCUUgu--CGa--AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 72928 0.68 0.993129
Target:  5'- gCCga--CGUCgGCGAACGGCcgggcCACCa -3'
miRNA:   3'- -GGaagaGCAGgCGCUUGUCGaa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 76784 0.66 0.99719
Target:  5'- aCCgaaUCGUCC-CGGauccaggaaGCAGCUucgaUCGCCg -3'
miRNA:   3'- -GGaagAGCAGGcGCU---------UGUCGA----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 77070 0.69 0.985337
Target:  5'- uCCUUUUCGaCCGgGGACcGacgUUCACCg -3'
miRNA:   3'- -GGAAGAGCaGGCgCUUGuCg--AAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 77548 0.68 0.988453
Target:  5'- gCCUa--CGU-CGCGGACGGCgggUCGCCc -3'
miRNA:   3'- -GGAagaGCAgGCGCUUGUCGa--AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 79582 0.72 0.923696
Target:  5'- gCCggUCUCGcuccuccgccucUUCGCGGGCGGCagCGCCg -3'
miRNA:   3'- -GGa-AGAGC------------AGGCGCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 80638 0.75 0.834572
Target:  5'- uCCggC-CGUCCGCG-GCGGCggCGCCg -3'
miRNA:   3'- -GGaaGaGCAGGCGCuUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 81408 0.68 0.993129
Target:  5'- gCCUUCUCGUCCuccccgcCGucGCGGCUccgUC-CCg -3'
miRNA:   3'- -GGAAGAGCAGGc------GCu-UGUCGA---AGuGG- -5'
8972 3' -51.5 NC_002512.2 + 82798 0.69 0.986966
Target:  5'- ---aCUUGUUCGCGAagcaGCGGCUccagagcgUCGCCc -3'
miRNA:   3'- ggaaGAGCAGGCGCU----UGUCGA--------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 84212 0.69 0.985337
Target:  5'- ---aCUCGUCCGCGGACaggcagacgaagAGCgagCGCg -3'
miRNA:   3'- ggaaGAGCAGGCGCUUG------------UCGaa-GUGg -5'
8972 3' -51.5 NC_002512.2 + 87417 0.66 0.998728
Target:  5'- aCCUUCccucuaUCGUCCacgaucauGCGAACAGCacagaacggaaACCg -3'
miRNA:   3'- -GGAAG------AGCAGG--------CGCUUGUCGaag--------UGG- -5'
8972 3' -51.5 NC_002512.2 + 89774 0.66 0.998421
Target:  5'- -gUUCUCGgacguccggcaguacUCCGacaGGACGGggUCGCCg -3'
miRNA:   3'- ggAAGAGC---------------AGGCg--CUUGUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 91293 0.66 0.998421
Target:  5'- gCCagcgUCUCcccggCCGCGAuccGCAGCguggucugcgacgcgUUCACCa -3'
miRNA:   3'- -GGa---AGAGca---GGCGCU---UGUCG---------------AAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 91807 0.66 0.998819
Target:  5'- --gUCUCGUCaGCGcAGCAGuCUcguguucgUCACCc -3'
miRNA:   3'- ggaAGAGCAGgCGC-UUGUC-GA--------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 92607 0.67 0.996546
Target:  5'- uCC-UUUCGUCCGCgaccuuuuuuccucGAucccGCAGCgcUCGCCg -3'
miRNA:   3'- -GGaAGAGCAGGCG--------------CU----UGUCGa-AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.