miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 1837 0.7 0.972118
Target:  5'- gCCgcagC-CGUCCGCGGGC-GUcUCGCCg -3'
miRNA:   3'- -GGaa--GaGCAGGCGCUUGuCGaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 2683 0.7 0.97723
Target:  5'- gCCUcCUgGUCCGCGcGCGGgagCGCCu -3'
miRNA:   3'- -GGAaGAgCAGGCGCuUGUCgaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 4364 0.67 0.995971
Target:  5'- cCCgccgUCcCGUCCGCGAagcccgggacccccGCGGCggCcCCg -3'
miRNA:   3'- -GGa---AGaGCAGGCGCU--------------UGUCGaaGuGG- -5'
8972 3' -51.5 NC_002512.2 + 5721 0.76 0.800449
Target:  5'- aCCUcUCUCGUCCGCuc-CGGUggCACCa -3'
miRNA:   3'- -GGA-AGAGCAGGCGcuuGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 5885 0.67 0.995524
Target:  5'- uCCgaCUCGUCgcuCGUGGACGGCggggCGCg -3'
miRNA:   3'- -GGaaGAGCAG---GCGCUUGUCGaa--GUGg -5'
8972 3' -51.5 NC_002512.2 + 8718 0.67 0.996092
Target:  5'- gCCUcuugcugUCUUcUCUGCuAACGGCUUCACg -3'
miRNA:   3'- -GGA-------AGAGcAGGCGcUUGUCGAAGUGg -5'
8972 3' -51.5 NC_002512.2 + 10204 0.75 0.826292
Target:  5'- uCCUcCUCGUCCuCGGGCGGCg-CGCCc -3'
miRNA:   3'- -GGAaGAGCAGGcGCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 13655 0.66 0.997615
Target:  5'- aCCgUCUCG-CCGCGGcucCAGCU-C-CCg -3'
miRNA:   3'- -GGaAGAGCaGGCGCUu--GUCGAaGuGG- -5'
8972 3' -51.5 NC_002512.2 + 15640 0.75 0.809223
Target:  5'- aCUcCUCGgCCGCGGGCGGCga-GCCg -3'
miRNA:   3'- gGAaGAGCaGGCGCUUGUCGaagUGG- -5'
8972 3' -51.5 NC_002512.2 + 17290 0.72 0.943439
Target:  5'- uCCUcCUCGUCUcCGGACAucGCgucgUCGCCg -3'
miRNA:   3'- -GGAaGAGCAGGcGCUUGU--CGa---AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 17780 0.69 0.986966
Target:  5'- gCUUCUCG-CCGUGGAacuCGGCgagCACg -3'
miRNA:   3'- gGAAGAGCaGGCGCUU---GUCGaa-GUGg -5'
8972 3' -51.5 NC_002512.2 + 18673 0.66 0.998751
Target:  5'- ---aCUCGUCggagaggaagagcuCGUGGGCGGCgggCACCc -3'
miRNA:   3'- ggaaGAGCAG--------------GCGCUUGUCGaa-GUGG- -5'
8972 3' -51.5 NC_002512.2 + 23010 0.66 0.99719
Target:  5'- aCCUaCcCGUCgGCGAGCucGGCgcCGCCc -3'
miRNA:   3'- -GGAaGaGCAGgCGCUUG--UCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 33704 0.67 0.993763
Target:  5'- cCUUUCcCGUCUGCGgAACAGCgUCuugcggauccggacGCCg -3'
miRNA:   3'- -GGAAGaGCAGGCGC-UUGUCGaAG--------------UGG- -5'
8972 3' -51.5 NC_002512.2 + 33880 0.71 0.955063
Target:  5'- cCCUUCgCGUCCGCGcACGGagagguggaaCGCCa -3'
miRNA:   3'- -GGAAGaGCAGGCGCuUGUCgaa-------GUGG- -5'
8972 3' -51.5 NC_002512.2 + 34837 0.66 0.99719
Target:  5'- aCCcUCcCGcCCGCGGgccgcgGCGGCUucuucgUCGCCg -3'
miRNA:   3'- -GGaAGaGCaGGCGCU------UGUCGA------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 38387 0.67 0.995524
Target:  5'- aCUggUgGUCCGUGAGCAGggUCugUa -3'
miRNA:   3'- gGAagAgCAGGCGCUUGUCgaAGugG- -5'
8972 3' -51.5 NC_002512.2 + 40565 0.68 0.993129
Target:  5'- gCUUCcgCGUCCGCGAACcGCg----- -3'
miRNA:   3'- gGAAGa-GCAGGCGCUUGuCGaagugg -5'
8972 3' -51.5 NC_002512.2 + 52519 0.66 0.997534
Target:  5'- aCCUUCUCGUCgaucgaccuaagGgGGACGGCggUgACCc -3'
miRNA:   3'- -GGAAGAGCAGg-----------CgCUUGUCGa-AgUGG- -5'
8972 3' -51.5 NC_002512.2 + 56233 0.66 0.998797
Target:  5'- uCCUUCUUGcugCCGCcgcccccGGACccgGGgUUCGCCg -3'
miRNA:   3'- -GGAAGAGCa--GGCG-------CUUG---UCgAAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.