miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 134769 0.7 0.966227
Target:  5'- uCCggUUCGUCgGCGGGCccGCcgUCGCCg -3'
miRNA:   3'- -GGaaGAGCAGgCGCUUGu-CGa-AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 188781 0.72 0.938852
Target:  5'- aCCUcucagaUCUCGUCgCGCGAcCuGUcUCACCa -3'
miRNA:   3'- -GGA------AGAGCAG-GCGCUuGuCGaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 17290 0.72 0.943439
Target:  5'- uCCUcCUCGUCUcCGGACAucGCgucgUCGCCg -3'
miRNA:   3'- -GGAaGAGCAGGcGCUUGU--CGa---AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 140246 0.72 0.943439
Target:  5'- aCCgcUUCGUCCGCcccguCGGCUUCGuCCg -3'
miRNA:   3'- -GGaaGAGCAGGCGcuu--GUCGAAGU-GG- -5'
8972 3' -51.5 NC_002512.2 + 104337 0.71 0.947794
Target:  5'- uCCUUC-CGUCgGuCGGGCGGCggcUCGCUu -3'
miRNA:   3'- -GGAAGaGCAGgC-GCUUGUCGa--AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 69427 0.71 0.951923
Target:  5'- ---gCUCGUgccCCGCGAAaCGGCcUUCGCCc -3'
miRNA:   3'- ggaaGAGCA---GGCGCUU-GUCG-AAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 33880 0.71 0.955063
Target:  5'- cCCUUCgCGUCCGCGcACGGagagguggaaCGCCa -3'
miRNA:   3'- -GGAAGaGCAGGCGCuUGUCgaa-------GUGG- -5'
8972 3' -51.5 NC_002512.2 + 108996 0.71 0.955826
Target:  5'- aCCUgCUCGUCgGCGccGGCGGCgUCGuCCu -3'
miRNA:   3'- -GGAaGAGCAGgCGC--UUGUCGaAGU-GG- -5'
8972 3' -51.5 NC_002512.2 + 119767 0.71 0.959508
Target:  5'- uCgUUCUgGUCCGgGGugugguagaacaGCAGCUgCACCg -3'
miRNA:   3'- -GgAAGAgCAGGCgCU------------UGUCGAaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 118060 0.72 0.934034
Target:  5'- cCCgggCUCGacUCCGCGGaggggGCGGCUccggCGCCg -3'
miRNA:   3'- -GGaa-GAGC--AGGCGCU-----UGUCGAa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 79582 0.72 0.923696
Target:  5'- gCCggUCUCGcuccuccgccucUUCGCGGGCGGCagCGCCg -3'
miRNA:   3'- -GGa-AGAGC------------AGGCGCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 188838 0.73 0.90644
Target:  5'- cCCUUCUCGUUCGUGAggacACAGa---GCCc -3'
miRNA:   3'- -GGAAGAGCAGGCGCU----UGUCgaagUGG- -5'
8972 3' -51.5 NC_002512.2 + 15640 0.75 0.809223
Target:  5'- aCUcCUCGgCCGCGGGCGGCga-GCCg -3'
miRNA:   3'- gGAaGAGCaGGCGCUUGUCGaagUGG- -5'
8972 3' -51.5 NC_002512.2 + 10204 0.75 0.826292
Target:  5'- uCCUcCUCGUCCuCGGGCGGCg-CGCCc -3'
miRNA:   3'- -GGAaGAGCAGGcGCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 80638 0.75 0.834572
Target:  5'- uCCggC-CGUCCGCG-GCGGCggCGCCg -3'
miRNA:   3'- -GGaaGaGCAGGCGCuUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 96474 0.74 0.873132
Target:  5'- gUUUUUCGUCCGCGGggcgccAUGGCgUCGCCc -3'
miRNA:   3'- gGAAGAGCAGGCGCU------UGUCGaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 117154 0.73 0.887119
Target:  5'- gCCUUCcgCGUgCCGCGGaacaugacccACAGCUUCGUCa -3'
miRNA:   3'- -GGAAGa-GCA-GGCGCU----------UGUCGAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 114961 0.73 0.893785
Target:  5'- aCCg---CGUCCGCGuucAGCAGCUUguCCa -3'
miRNA:   3'- -GGaagaGCAGGCGC---UUGUCGAAguGG- -5'
8972 3' -51.5 NC_002512.2 + 104936 0.73 0.900226
Target:  5'- gCCUcCUCGUCCgGCGu-CGGCgcggCGCCg -3'
miRNA:   3'- -GGAaGAGCAGG-CGCuuGUCGaa--GUGG- -5'
8972 3' -51.5 NC_002512.2 + 120166 0.73 0.90644
Target:  5'- uCCUcgcggcUCUCGUCCGUGAuCAGCacgGCCu -3'
miRNA:   3'- -GGA------AGAGCAGGCGCUuGUCGaagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.