miRNA display CGI


Results 1 - 20 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 34837 0.66 0.99719
Target:  5'- aCCcUCcCGcCCGCGGgccgcgGCGGCUucuucgUCGCCg -3'
miRNA:   3'- -GGaAGaGCaGGCGCU------UGUCGA------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 116085 0.66 0.998305
Target:  5'- aCUUcCUCGUCUGUcuGGCGcGCUaccUCACCg -3'
miRNA:   3'- gGAA-GAGCAGGCGc-UUGU-CGA---AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 91293 0.66 0.998421
Target:  5'- gCCagcgUCUCcccggCCGCGAuccGCAGCguggucugcgacgcgUUCACCa -3'
miRNA:   3'- -GGa---AGAGca---GGCGCU---UGUCG---------------AAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 96974 0.66 0.997615
Target:  5'- gUCUUC-CGcCCGCGAGaguaucGCgUCGCCg -3'
miRNA:   3'- -GGAAGaGCaGGCGCUUgu----CGaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 156354 0.66 0.997985
Target:  5'- ---cCUUGUCCGUGAucuGCAGCaaCugCg -3'
miRNA:   3'- ggaaGAGCAGGCGCU---UGUCGaaGugG- -5'
8972 3' -51.5 NC_002512.2 + 76784 0.66 0.99719
Target:  5'- aCCgaaUCGUCC-CGGauccaggaaGCAGCUucgaUCGCCg -3'
miRNA:   3'- -GGaagAGCAGGcGCU---------UGUCGA----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 129330 0.66 0.997575
Target:  5'- gCUUCUgCGUCaCGgaccucugcgcccUGGGCAGCgucgUCGCCu -3'
miRNA:   3'- gGAAGA-GCAG-GC-------------GCUUGUCGa---AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 23010 0.66 0.99719
Target:  5'- aCCUaCcCGUCgGCGAGCucGGCgcCGCCc -3'
miRNA:   3'- -GGAaGaGCAGgCGCUUG--UCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 226809 0.66 0.99719
Target:  5'- --aUCUCGUCgGCGGACgggucguggggAGCggaaGCCa -3'
miRNA:   3'- ggaAGAGCAGgCGCUUG-----------UCGaag-UGG- -5'
8972 3' -51.5 NC_002512.2 + 69789 0.66 0.997615
Target:  5'- aCCgUCUgggCGUCCGUaucCAGCUgCACCa -3'
miRNA:   3'- -GGaAGA---GCAGGCGcuuGUCGAaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 114167 0.66 0.998305
Target:  5'- --gUCUCGgCCGCcuccGACAGCUUgAUCu -3'
miRNA:   3'- ggaAGAGCaGGCGc---UUGUCGAAgUGG- -5'
8972 3' -51.5 NC_002512.2 + 112890 0.66 0.998581
Target:  5'- gCgUUCUCGUCggucgccgcguCGCGGAcCAGCUcgaUCAgCa -3'
miRNA:   3'- -GgAAGAGCAG-----------GCGCUU-GUCGA---AGUgG- -5'
8972 3' -51.5 NC_002512.2 + 119357 0.66 0.99795
Target:  5'- gCCUUCUcCGcCCGCGGgaugguggacgacGCGGCggC-CCu -3'
miRNA:   3'- -GGAAGA-GCaGGCGCU-------------UGUCGaaGuGG- -5'
8972 3' -51.5 NC_002512.2 + 138618 0.66 0.997985
Target:  5'- aCCgUCUCaUUCGCGAACAGggggacCACCc -3'
miRNA:   3'- -GGaAGAGcAGGCGCUUGUCgaa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 13655 0.66 0.997615
Target:  5'- aCCgUCUCG-CCGCGGcucCAGCU-C-CCg -3'
miRNA:   3'- -GGaAGAGCaGGCGCUu--GUCGAaGuGG- -5'
8972 3' -51.5 NC_002512.2 + 52519 0.66 0.997534
Target:  5'- aCCUUCUCGUCgaucgaccuaagGgGGACGGCggUgACCc -3'
miRNA:   3'- -GGAAGAGCAGg-----------CgCUUGUCGa-AgUGG- -5'
8972 3' -51.5 NC_002512.2 + 121766 0.66 0.997615
Target:  5'- gCC-UCUCGggaCCGCGGACcgccgaGGCggggaCGCCg -3'
miRNA:   3'- -GGaAGAGCa--GGCGCUUG------UCGaa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 105377 0.66 0.998275
Target:  5'- gCCUUgaCGuacagggUCCGgGGACAGCg-CACCu -3'
miRNA:   3'- -GGAAgaGC-------AGGCgCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 124599 0.66 0.998305
Target:  5'- cCCUguccCUCGUCUucgGCGucgGCGGCgucggCGCCu -3'
miRNA:   3'- -GGAa---GAGCAGG---CGCu--UGUCGaa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 152702 0.66 0.997769
Target:  5'- uCCUcgaUCGUCCGCGAAgaaucgauuuauuaAGCUUCGg- -3'
miRNA:   3'- -GGAag-AGCAGGCGCUUg-------------UCGAAGUgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.