miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 200995 1.16 0.005252
Target:  5'- aCCUUCUCGUCCGCGAACAGCUUCACCa -3'
miRNA:   3'- -GGAAGAGCAGGCGCUUGUCGAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 200301 0.8 0.604249
Target:  5'- aCUggggCUCGUCCGCccucgggGAGCGGCUUCccGCCg -3'
miRNA:   3'- gGAa---GAGCAGGCG-------CUUGUCGAAG--UGG- -5'
8972 3' -51.5 NC_002512.2 + 180088 0.79 0.635606
Target:  5'- gUUUCUCGUCCGCGA-UGGCgucCACCu -3'
miRNA:   3'- gGAAGAGCAGGCGCUuGUCGaa-GUGG- -5'
8972 3' -51.5 NC_002512.2 + 124184 0.78 0.696007
Target:  5'- aCCUggcugCUCGUCCGCcggGGACAGaggCACCg -3'
miRNA:   3'- -GGAa----GAGCAGGCG---CUUGUCgaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 169023 0.76 0.763946
Target:  5'- uCCgggCgggCGUCCGCGAGCGGCgccggCAUCu -3'
miRNA:   3'- -GGaa-Ga--GCAGGCGCUUGUCGaa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 190833 0.76 0.791525
Target:  5'- uCCUgggcCUCGUCCGCuaccgcagcAACAGCUUCuACCu -3'
miRNA:   3'- -GGAa---GAGCAGGCGc--------UUGUCGAAG-UGG- -5'
8972 3' -51.5 NC_002512.2 + 5721 0.76 0.800449
Target:  5'- aCCUcUCUCGUCCGCuc-CGGUggCACCa -3'
miRNA:   3'- -GGA-AGAGCAGGCGcuuGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 15640 0.75 0.809223
Target:  5'- aCUcCUCGgCCGCGGGCGGCga-GCCg -3'
miRNA:   3'- gGAaGAGCaGGCGCUUGUCGaagUGG- -5'
8972 3' -51.5 NC_002512.2 + 10204 0.75 0.826292
Target:  5'- uCCUcCUCGUCCuCGGGCGGCg-CGCCc -3'
miRNA:   3'- -GGAaGAGCAGGcGCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 80638 0.75 0.834572
Target:  5'- uCCggC-CGUCCGCG-GCGGCggCGCCg -3'
miRNA:   3'- -GGaaGaGCAGGCGCuUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 70242 0.74 0.858301
Target:  5'- gCCggcgCUCGUCUGCGAGaaucGCgggUCACCu -3'
miRNA:   3'- -GGaa--GAGCAGGCGCUUgu--CGa--AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 96474 0.74 0.873132
Target:  5'- gUUUUUCGUCCGCGGggcgccAUGGCgUCGCCc -3'
miRNA:   3'- gGAAGAGCAGGCGCU------UGUCGaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 117154 0.73 0.887119
Target:  5'- gCCUUCcgCGUgCCGCGGaacaugacccACAGCUUCGUCa -3'
miRNA:   3'- -GGAAGa-GCA-GGCGCU----------UGUCGAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 216865 0.73 0.887119
Target:  5'- cCCUcgUCGUCCGCGucgucguuCAGgaUCGCCa -3'
miRNA:   3'- -GGAagAGCAGGCGCuu------GUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 188084 0.73 0.887119
Target:  5'- --aUCgUCGUCCGCGAgaACGGCaacucggUCGCCc -3'
miRNA:   3'- ggaAG-AGCAGGCGCU--UGUCGa------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 218523 0.73 0.893128
Target:  5'- cCCUcgUCGUCCgacGCGAACAGUUugcgcucUCGCCu -3'
miRNA:   3'- -GGAagAGCAGG---CGCUUGUCGA-------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 114961 0.73 0.893785
Target:  5'- aCCg---CGUCCGCGuucAGCAGCUUguCCa -3'
miRNA:   3'- -GGaagaGCAGGCGC---UUGUCGAAguGG- -5'
8972 3' -51.5 NC_002512.2 + 190384 0.73 0.900226
Target:  5'- aCCUgCUCa-CCaaGAACGGCUUCGCCg -3'
miRNA:   3'- -GGAaGAGcaGGcgCUUGUCGAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 104936 0.73 0.900226
Target:  5'- gCCUcCUCGUCCgGCGu-CGGCgcggCGCCg -3'
miRNA:   3'- -GGAaGAGCAGG-CGCuuGUCGaa--GUGG- -5'
8972 3' -51.5 NC_002512.2 + 120166 0.73 0.90644
Target:  5'- uCCUcgcggcUCUCGUCCGUGAuCAGCacgGCCu -3'
miRNA:   3'- -GGA------AGAGCAGGCGCUuGUCGaagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.