miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 141270 0.66 0.998796
Target:  5'- aCCacgUUCGUCCcgacgccggccgcGCGcACGGCggCACCg -3'
miRNA:   3'- -GGaa-GAGCAGG-------------CGCuUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 108741 0.66 0.997367
Target:  5'- gCCUUCUCG-CggaggcagugcgcggCGCGGGCgauccGGCUgucgUCACCg -3'
miRNA:   3'- -GGAAGAGCaG---------------GCGCUUG-----UCGA----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 176391 0.66 0.99719
Target:  5'- cUCUUCgaUCGUCCGCGccGCGucGUggCACCu -3'
miRNA:   3'- -GGAAG--AGCAGGCGCu-UGU--CGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 200995 1.16 0.005252
Target:  5'- aCCUUCUCGUCCGCGAACAGCUUCACCa -3'
miRNA:   3'- -GGAAGAGCAGGCGCUUGUCGAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 187244 0.66 0.998581
Target:  5'- gCUUCgUCGaacccUCCGCGuuGAUGGCggacgUCGCCu -3'
miRNA:   3'- gGAAG-AGC-----AGGCGC--UUGUCGa----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 161506 0.66 0.998581
Target:  5'- aCCUggugCGcUgCGCGGACGGCacCGCCg -3'
miRNA:   3'- -GGAaga-GC-AgGCGCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 89774 0.66 0.998421
Target:  5'- -gUUCUCGgacguccggcaguacUCCGacaGGACGGggUCGCCg -3'
miRNA:   3'- ggAAGAGC---------------AGGCg--CUUGUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 182639 0.66 0.998305
Target:  5'- aUCUUCUccagCGcCUGCGucuCGGCcUCGCCg -3'
miRNA:   3'- -GGAAGA----GCaGGCGCuu-GUCGaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 228053 0.66 0.997985
Target:  5'- -----aCGcCCGCGGACGGCUgcggCGCg -3'
miRNA:   3'- ggaagaGCaGGCGCUUGUCGAa---GUGg -5'
8972 3' -51.5 NC_002512.2 + 106867 0.66 0.997615
Target:  5'- aCCUcCUCGUCgCGCacGAGCAGCcggauCCu -3'
miRNA:   3'- -GGAaGAGCAG-GCG--CUUGUCGaagu-GG- -5'
8972 3' -51.5 NC_002512.2 + 218214 0.66 0.997985
Target:  5'- cCCgcCUCGggCCGCGGcggGCcGCggCGCCg -3'
miRNA:   3'- -GGaaGAGCa-GGCGCU---UGuCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 150498 0.66 0.998019
Target:  5'- aUUUCUCGUCCGCccgcgggucgggguGCAGUUcCACg -3'
miRNA:   3'- gGAAGAGCAGGCGcu------------UGUCGAaGUGg -5'
8972 3' -51.5 NC_002512.2 + 214444 0.66 0.998751
Target:  5'- cCCgUCUaCGUCgGCGAggacgaggccgucuACuGCUUcCACCg -3'
miRNA:   3'- -GGaAGA-GCAGgCGCU--------------UGuCGAA-GUGG- -5'
8972 3' -51.5 NC_002512.2 + 216178 0.66 0.997615
Target:  5'- cCCgcgUCUCGggaucgcgcCCGUGAucaccgccGCGGCcgUCGCCu -3'
miRNA:   3'- -GGa--AGAGCa--------GGCGCU--------UGUCGa-AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 87417 0.66 0.998728
Target:  5'- aCCUUCccucuaUCGUCCacgaucauGCGAACAGCacagaacggaaACCg -3'
miRNA:   3'- -GGAAG------AGCAGG--------CGCUUGUCGaag--------UGG- -5'
8972 3' -51.5 NC_002512.2 + 140424 0.66 0.998275
Target:  5'- uCCcUCcCGUCCGCGucGcucgccuuccgacACAGCUcgCGCCa -3'
miRNA:   3'- -GGaAGaGCAGGCGC--U-------------UGUCGAa-GUGG- -5'
8972 3' -51.5 NC_002512.2 + 186131 0.66 0.997615
Target:  5'- ---cCUCGUCUGC-AAUAGCUUCcUCg -3'
miRNA:   3'- ggaaGAGCAGGCGcUUGUCGAAGuGG- -5'
8972 3' -51.5 NC_002512.2 + 189526 0.66 0.99719
Target:  5'- cCCgggCUCG-CCGCGGucggcguccGCGGCaUCugCu -3'
miRNA:   3'- -GGaa-GAGCaGGCGCU---------UGUCGaAGugG- -5'
8972 3' -51.5 NC_002512.2 + 199910 0.66 0.998581
Target:  5'- cCCgugUCugUCGUCCGUucGCGGCcggcCGCCg -3'
miRNA:   3'- -GGa--AG--AGCAGGCGcuUGUCGaa--GUGG- -5'
8972 3' -51.5 NC_002512.2 + 208302 0.66 0.998581
Target:  5'- gCUUUCcCGUCUGCGAcaugaAGCgccucaUCGCCu -3'
miRNA:   3'- -GGAAGaGCAGGCGCUug---UCGa-----AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.