miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 228053 0.66 0.997985
Target:  5'- -----aCGcCCGCGGACGGCUgcggCGCg -3'
miRNA:   3'- ggaagaGCaGGCGCUUGUCGAa---GUGg -5'
8972 3' -51.5 NC_002512.2 + 227418 0.67 0.994816
Target:  5'- aCCUacUCUCG-CgCGCGGGCgcgGGCcgcggUCACCu -3'
miRNA:   3'- -GGA--AGAGCaG-GCGCUUG---UCGa----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 226809 0.66 0.99719
Target:  5'- --aUCUCGUCgGCGGACgggucguggggAGCggaaGCCa -3'
miRNA:   3'- ggaAGAGCAGgCGCUUG-----------UCGaag-UGG- -5'
8972 3' -51.5 NC_002512.2 + 226071 0.66 0.997985
Target:  5'- aCCUaCUCuUCCGUcGACGGCU-CGCUc -3'
miRNA:   3'- -GGAaGAGcAGGCGcUUGUCGAaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 225848 0.67 0.993936
Target:  5'- cCCUUCUCGgguggaCCGUaguacauGAacACGGCUcCGCCu -3'
miRNA:   3'- -GGAAGAGCa-----GGCG-------CU--UGUCGAaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 220095 0.66 0.997003
Target:  5'- uCCUUCgaggaggucgaggCGUCCGUGAGCcGCcaCGCg -3'
miRNA:   3'- -GGAAGa------------GCAGGCGCUUGuCGaaGUGg -5'
8972 3' -51.5 NC_002512.2 + 219531 0.7 0.974768
Target:  5'- cCCgUCuUCGUCgGCGugcccaccgGACGGuCUUCGCCg -3'
miRNA:   3'- -GGaAG-AGCAGgCGC---------UUGUC-GAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 219304 0.67 0.994104
Target:  5'- gCUUCgUCGUCCGCGGccacggggagagcguCGGCguggccCGCCg -3'
miRNA:   3'- gGAAG-AGCAGGCGCUu--------------GUCGaa----GUGG- -5'
8972 3' -51.5 NC_002512.2 + 218820 0.7 0.97723
Target:  5'- uCCgUCUCGcccUCCGCGGcccugcucuGCGaCUUCGCCg -3'
miRNA:   3'- -GGaAGAGC---AGGCGCU---------UGUcGAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 218523 0.73 0.893128
Target:  5'- cCCUcgUCGUCCgacGCGAACAGUUugcgcucUCGCCu -3'
miRNA:   3'- -GGAagAGCAGG---CGCUUGUCGA-------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 218214 0.66 0.997985
Target:  5'- cCCgcCUCGggCCGCGGcggGCcGCggCGCCg -3'
miRNA:   3'- -GGaaGAGCa-GGCGCU---UGuCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 217004 0.72 0.943438
Target:  5'- gCC-UCUCGUucucCCGCGu-CGGCUUCAgCa -3'
miRNA:   3'- -GGaAGAGCA----GGCGCuuGUCGAAGUgG- -5'
8972 3' -51.5 NC_002512.2 + 216865 0.73 0.887119
Target:  5'- cCCUcgUCGUCCGCGucgucguuCAGgaUCGCCa -3'
miRNA:   3'- -GGAagAGCAGGCGCuu------GUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 216178 0.66 0.997615
Target:  5'- cCCgcgUCUCGggaucgcgcCCGUGAucaccgccGCGGCcgUCGCCu -3'
miRNA:   3'- -GGa--AGAGCa--------GGCGCU--------UGUCGa-AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 215695 0.68 0.991029
Target:  5'- cCCUUCUgGUUCGgGGACcGCaUC-CCg -3'
miRNA:   3'- -GGAAGAgCAGGCgCUUGuCGaAGuGG- -5'
8972 3' -51.5 NC_002512.2 + 214911 0.7 0.969273
Target:  5'- aCUUUCUgcgCGUccaCCGCGGccGCGGCUUCGuCCu -3'
miRNA:   3'- -GGAAGA---GCA---GGCGCU--UGUCGAAGU-GG- -5'
8972 3' -51.5 NC_002512.2 + 214444 0.66 0.998751
Target:  5'- cCCgUCUaCGUCgGCGAggacgaggccgucuACuGCUUcCACCg -3'
miRNA:   3'- -GGaAGA-GCAGgCGCU--------------UGuCGAA-GUGG- -5'
8972 3' -51.5 NC_002512.2 + 208302 0.66 0.998581
Target:  5'- gCUUUCcCGUCUGCGAcaugaAGCgccucaUCGCCu -3'
miRNA:   3'- -GGAAGaGCAGGCGCUug---UCGa-----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 206877 0.66 0.99719
Target:  5'- gCCgagCUCG-CCGaCGggUAGg-UCACCa -3'
miRNA:   3'- -GGaa-GAGCaGGC-GCuuGUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 201831 0.69 0.981617
Target:  5'- cCCgggggCUCcuUCCGCGGccgGCAGC-UCGCCu -3'
miRNA:   3'- -GGaa---GAGc-AGGCGCU---UGUCGaAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.