miRNA display CGI


Results 41 - 60 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 76784 0.66 0.99719
Target:  5'- aCCgaaUCGUCC-CGGauccaggaaGCAGCUucgaUCGCCg -3'
miRNA:   3'- -GGaagAGCAGGcGCU---------UGUCGA----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 34837 0.66 0.99719
Target:  5'- aCCcUCcCGcCCGCGGgccgcgGCGGCUucuucgUCGCCg -3'
miRNA:   3'- -GGaAGaGCaGGCGCU------UGUCGA------AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 206877 0.66 0.99719
Target:  5'- gCCgagCUCG-CCGaCGggUAGg-UCACCa -3'
miRNA:   3'- -GGaa-GAGCaGGC-GCuuGUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 165714 0.66 0.99719
Target:  5'- gCUUCgUCGUCgGgGGgucgggggcGCAucGCUUCACCu -3'
miRNA:   3'- gGAAG-AGCAGgCgCU---------UGU--CGAAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 176391 0.66 0.99719
Target:  5'- cUCUUCgaUCGUCCGCGccGCGucGUggCACCu -3'
miRNA:   3'- -GGAAG--AGCAGGCGCu-UGU--CGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 189526 0.66 0.99719
Target:  5'- cCCgggCUCG-CCGCGGucggcguccGCGGCaUCugCu -3'
miRNA:   3'- -GGaa-GAGCaGGCGCU---------UGUCGaAGugG- -5'
8972 3' -51.5 NC_002512.2 + 226809 0.66 0.99719
Target:  5'- --aUCUCGUCgGCGGACgggucguggggAGCggaaGCCa -3'
miRNA:   3'- ggaAGAGCAGgCGCUUG-----------UCGaag-UGG- -5'
8972 3' -51.5 NC_002512.2 + 220095 0.66 0.997003
Target:  5'- uCCUUCgaggaggucgaggCGUCCGUGAGCcGCcaCGCg -3'
miRNA:   3'- -GGAAGa------------GCAGGCGCUUGuCGaaGUGg -5'
8972 3' -51.5 NC_002512.2 + 115633 0.67 0.996704
Target:  5'- -aUUCUCG-CCuCGcGCAGCcggUCGCCg -3'
miRNA:   3'- ggAAGAGCaGGcGCuUGUCGa--AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 141678 0.67 0.996704
Target:  5'- --cUCUCGUuccCCGCGuACGGUcUCACg -3'
miRNA:   3'- ggaAGAGCA---GGCGCuUGUCGaAGUGg -5'
8972 3' -51.5 NC_002512.2 + 158895 0.67 0.996704
Target:  5'- uCCUUCguccCGUCCucggucGCGGccgaguACGGCUUCGgCg -3'
miRNA:   3'- -GGAAGa---GCAGG------CGCU------UGUCGAAGUgG- -5'
8972 3' -51.5 NC_002512.2 + 98299 0.67 0.996704
Target:  5'- uCCUcCUCGUCCgaggugucgGUGAGCAcGCUgaagUCGCUc -3'
miRNA:   3'- -GGAaGAGCAGG---------CGCUUGU-CGA----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 92607 0.67 0.996546
Target:  5'- uCC-UUUCGUCCGCgaccuuuuuuccucGAucccGCAGCgcUCGCCg -3'
miRNA:   3'- -GGaAGAGCAGGCG--------------CU----UGUCGa-AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 139978 0.67 0.996151
Target:  5'- cCCUgcaUCGUCUGCGu--GGggUCGCCg -3'
miRNA:   3'- -GGAag-AGCAGGCGCuugUCgaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 8718 0.67 0.996092
Target:  5'- gCCUcuugcugUCUUcUCUGCuAACGGCUUCACg -3'
miRNA:   3'- -GGA-------AGAGcAGGCGcUUGUCGAAGUGg -5'
8972 3' -51.5 NC_002512.2 + 128793 0.67 0.996032
Target:  5'- cCCUcugggUCUCcggcgugGUCCGCGGGCGgGCccucgacgccgggUUCGCCg -3'
miRNA:   3'- -GGA-----AGAG-------CAGGCGCUUGU-CG-------------AAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 4364 0.67 0.995971
Target:  5'- cCCgccgUCcCGUCCGCGAagcccgggacccccGCGGCggCcCCg -3'
miRNA:   3'- -GGa---AGaGCAGGCGCU--------------UGUCGaaGuGG- -5'
8972 3' -51.5 NC_002512.2 + 98177 0.67 0.995524
Target:  5'- cCCgUCaUCGUCUcCGAGCAGCacUACCu -3'
miRNA:   3'- -GGaAG-AGCAGGcGCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 65830 0.67 0.995524
Target:  5'- cCCggaUCUCG-CCGCGAgaguACAGCUcCAg- -3'
miRNA:   3'- -GGa--AGAGCaGGCGCU----UGUCGAaGUgg -5'
8972 3' -51.5 NC_002512.2 + 5885 0.67 0.995524
Target:  5'- uCCgaCUCGUCgcuCGUGGACGGCggggCGCg -3'
miRNA:   3'- -GGaaGAGCAG---GCGCUUGUCGaa--GUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.