miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8972 3' -51.5 NC_002512.2 + 105377 0.66 0.998275
Target:  5'- gCCUUgaCGuacagggUCCGgGGACAGCg-CACCu -3'
miRNA:   3'- -GGAAgaGC-------AGGCgCUUGUCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 150498 0.66 0.998019
Target:  5'- aUUUCUCGUCCGCccgcgggucgggguGCAGUUcCACg -3'
miRNA:   3'- gGAAGAGCAGGCGcu------------UGUCGAaGUGg -5'
8972 3' -51.5 NC_002512.2 + 156354 0.66 0.997985
Target:  5'- ---cCUUGUCCGUGAucuGCAGCaaCugCg -3'
miRNA:   3'- ggaaGAGCAGGCGCU---UGUCGaaGugG- -5'
8972 3' -51.5 NC_002512.2 + 228053 0.66 0.997985
Target:  5'- -----aCGcCCGCGGACGGCUgcggCGCg -3'
miRNA:   3'- ggaagaGCaGGCGCUUGUCGAa---GUGg -5'
8972 3' -51.5 NC_002512.2 + 218214 0.66 0.997985
Target:  5'- cCCgcCUCGggCCGCGGcggGCcGCggCGCCg -3'
miRNA:   3'- -GGaaGAGCa-GGCGCU---UGuCGaaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 138618 0.66 0.997985
Target:  5'- aCCgUCUCaUUCGCGAACAGggggacCACCc -3'
miRNA:   3'- -GGaAGAGcAGGCGCUUGUCgaa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 226071 0.66 0.997985
Target:  5'- aCCUaCUCuUCCGUcGACGGCU-CGCUc -3'
miRNA:   3'- -GGAaGAGcAGGCGcUUGUCGAaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 119357 0.66 0.99795
Target:  5'- gCCUUCUcCGcCCGCGGgaugguggacgacGCGGCggC-CCu -3'
miRNA:   3'- -GGAAGA-GCaGGCGCU-------------UGUCGaaGuGG- -5'
8972 3' -51.5 NC_002512.2 + 152702 0.66 0.997769
Target:  5'- uCCUcgaUCGUCCGCGAAgaaucgauuuauuaAGCUUCGg- -3'
miRNA:   3'- -GGAag-AGCAGGCGCUUg-------------UCGAAGUgg -5'
8972 3' -51.5 NC_002512.2 + 69789 0.66 0.997615
Target:  5'- aCCgUCUgggCGUCCGUaucCAGCUgCACCa -3'
miRNA:   3'- -GGaAGA---GCAGGCGcuuGUCGAaGUGG- -5'
8972 3' -51.5 NC_002512.2 + 216178 0.66 0.997615
Target:  5'- cCCgcgUCUCGggaucgcgcCCGUGAucaccgccGCGGCcgUCGCCu -3'
miRNA:   3'- -GGa--AGAGCa--------GGCGCU--------UGUCGa-AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 186131 0.66 0.997615
Target:  5'- ---cCUCGUCUGC-AAUAGCUUCcUCg -3'
miRNA:   3'- ggaaGAGCAGGCGcUUGUCGAAGuGG- -5'
8972 3' -51.5 NC_002512.2 + 106867 0.66 0.997615
Target:  5'- aCCUcCUCGUCgCGCacGAGCAGCcggauCCu -3'
miRNA:   3'- -GGAaGAGCAG-GCG--CUUGUCGaagu-GG- -5'
8972 3' -51.5 NC_002512.2 + 96974 0.66 0.997615
Target:  5'- gUCUUC-CGcCCGCGAGaguaucGCgUCGCCg -3'
miRNA:   3'- -GGAAGaGCaGGCGCUUgu----CGaAGUGG- -5'
8972 3' -51.5 NC_002512.2 + 121766 0.66 0.997615
Target:  5'- gCC-UCUCGggaCCGCGGACcgccgaGGCggggaCGCCg -3'
miRNA:   3'- -GGaAGAGCa--GGCGCUUG------UCGaa---GUGG- -5'
8972 3' -51.5 NC_002512.2 + 13655 0.66 0.997615
Target:  5'- aCCgUCUCG-CCGCGGcucCAGCU-C-CCg -3'
miRNA:   3'- -GGaAGAGCaGGCGCUu--GUCGAaGuGG- -5'
8972 3' -51.5 NC_002512.2 + 129330 0.66 0.997575
Target:  5'- gCUUCUgCGUCaCGgaccucugcgcccUGGGCAGCgucgUCGCCu -3'
miRNA:   3'- gGAAGA-GCAG-GC-------------GCUUGUCGa---AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 52519 0.66 0.997534
Target:  5'- aCCUUCUCGUCgaucgaccuaagGgGGACGGCggUgACCc -3'
miRNA:   3'- -GGAAGAGCAGg-----------CgCUUGUCGa-AgUGG- -5'
8972 3' -51.5 NC_002512.2 + 108741 0.66 0.997367
Target:  5'- gCCUUCUCG-CggaggcagugcgcggCGCGGGCgauccGGCUgucgUCACCg -3'
miRNA:   3'- -GGAAGAGCaG---------------GCGCUUG-----UCGA----AGUGG- -5'
8972 3' -51.5 NC_002512.2 + 34837 0.66 0.99719
Target:  5'- aCCcUCcCGcCCGCGGgccgcgGCGGCUucuucgUCGCCg -3'
miRNA:   3'- -GGaAGaGCaGGCGCU------UGUCGA------AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.