miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 113407 0.67 0.762194
Target:  5'- gGUAGUGcgcGUGGGCCGCcgggaucaccGCCCcguccccgagcuggGUGGCGa -3'
miRNA:   3'- aCAUCAU---CACCCGGCG----------CGGG--------------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 115198 0.7 0.584734
Target:  5'- -aUGGU-GUGGGCCGCGCaggCCAgGGaCGu -3'
miRNA:   3'- acAUCAuCACCCGGCGCG---GGUgCC-GC- -5'
8973 3' -60.7 NC_002512.2 + 115678 0.68 0.671503
Target:  5'- cGUGGgcucGGGCCGgGCCuacagCACGGUGg -3'
miRNA:   3'- aCAUCaucaCCCGGCgCGG-----GUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 127350 0.66 0.819622
Target:  5'- aGUcGGUAGggaaaccggGGGCCugacccccgacggccGCGacuCCCGCGGCGg -3'
miRNA:   3'- aCA-UCAUCa--------CCCGG---------------CGC---GGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 127667 0.67 0.764881
Target:  5'- --cGGUcGaGGGCCGCuccGgCCGCGGCGa -3'
miRNA:   3'- acaUCAuCaCCCGGCG---CgGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 129095 0.66 0.782543
Target:  5'- -----gAGgacGGGCgGCGUCUGCGGCGg -3'
miRNA:   3'- acaucaUCa--CCCGgCGCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 130138 0.73 0.405292
Target:  5'- --gGGUGGUGucgcGGCCGCgggGCCCGgCGGCGg -3'
miRNA:   3'- acaUCAUCAC----CCGGCG---CGGGU-GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 131990 0.67 0.746799
Target:  5'- --aGGUcgcGUGGGCCGC-CCCG-GGCGc -3'
miRNA:   3'- acaUCAu--CACCCGGCGcGGGUgCCGC- -5'
8973 3' -60.7 NC_002512.2 + 133158 0.67 0.764881
Target:  5'- cGUccGGUucccGcGGGCCG-GCCCGCGGgGg -3'
miRNA:   3'- aCA--UCAu---CaCCCGGCgCGGGUGCCgC- -5'
8973 3' -60.7 NC_002512.2 + 133576 0.68 0.690649
Target:  5'- cGUGcGgcGaccGGCC-CGCCCGCGGCGg -3'
miRNA:   3'- aCAU-CauCac-CCGGcGCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 136604 0.74 0.358474
Target:  5'- cGUacaGGUAGcGGGCCGCGCCCucCaGCGu -3'
miRNA:   3'- aCA---UCAUCaCCCGGCGCGGGu-GcCGC- -5'
8973 3' -60.7 NC_002512.2 + 137196 0.7 0.575164
Target:  5'- cGUcGGUccgcccGGUGGGCgGCGCgCC-CGGCGc -3'
miRNA:   3'- aCA-UCA------UCACCCGgCGCG-GGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 137798 0.66 0.808115
Target:  5'- -----cGGcGGGCCGCGCgUcCGGCGg -3'
miRNA:   3'- acaucaUCaCCCGGCGCGgGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 141289 0.67 0.728358
Target:  5'- ---------cGGCCGCGCgCACGGCGg -3'
miRNA:   3'- acaucaucacCCGGCGCGgGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 146264 0.66 0.791198
Target:  5'- ----cUGGUGGGCCGCcugaacgccguGUCCAacccCGGCGa -3'
miRNA:   3'- acaucAUCACCCGGCG-----------CGGGU----GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 149413 0.69 0.652243
Target:  5'- --------cGGGCCGCGaggggaCCGCGGCGg -3'
miRNA:   3'- acaucaucaCCCGGCGCg-----GGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 153329 0.67 0.746799
Target:  5'- gGUGGUuccgcUGGGCCG-GUCCGgguCGGCGg -3'
miRNA:   3'- aCAUCAuc---ACCCGGCgCGGGU---GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 154637 0.66 0.824464
Target:  5'- cGUGGggacGGgacGcGGCCGCGCUCgucaccgcgACGGCGu -3'
miRNA:   3'- aCAUCa---UCa--C-CCGGCGCGGG---------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 154730 0.66 0.791198
Target:  5'- cGgcGUugcGUccGcGGCCGCGUCCgACGGCGu -3'
miRNA:   3'- aCauCAu--CA--C-CCGGCGCGGG-UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 157075 0.71 0.491256
Target:  5'- --gGGUccgGGGUCgccgGCGCCCACGGCGg -3'
miRNA:   3'- acaUCAucaCCCGG----CGCGGGUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.