miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 83145 0.66 0.824464
Target:  5'- cGUcgaGGUcGUcGGGCCcgGCGgCCGCGGCc -3'
miRNA:   3'- aCA---UCAuCA-CCCGG--CGCgGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 84773 0.69 0.623263
Target:  5'- cGUAGUAGauGGCCGUGUCgGcCGGCa -3'
miRNA:   3'- aCAUCAUCacCCGGCGCGGgU-GCCGc -5'
8973 3' -60.7 NC_002512.2 + 86646 0.74 0.381404
Target:  5'- gUGUGGUGGaucgcgGuGGCCGCGUCCgagcggACGGCGc -3'
miRNA:   3'- -ACAUCAUCa-----C-CCGGCGCGGG------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 89122 0.66 0.799724
Target:  5'- aGgcGUAGaGGGCC-UGCUcaCACGGCGu -3'
miRNA:   3'- aCauCAUCaCCCGGcGCGG--GUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 90501 0.66 0.791198
Target:  5'- --cGGgaucgGGGCCGagGCCgGCGGCGg -3'
miRNA:   3'- acaUCauca-CCCGGCg-CGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 95251 0.66 0.799724
Target:  5'- gGgcGUccGGaGGGCCGCGCggcuCCugaACGGCGg -3'
miRNA:   3'- aCauCA--UCaCCCGGCGCG----GG---UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 96191 0.71 0.509468
Target:  5'- gGUGGUccGGgagGcGGCCGCGaggucggCCACGGCGg -3'
miRNA:   3'- aCAUCA--UCa--C-CCGGCGCg------GGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 96519 0.68 0.709621
Target:  5'- --cGG-AG-GGaGCCGCGCCgGCGGUGu -3'
miRNA:   3'- acaUCaUCaCC-CGGCGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 98136 0.66 0.824464
Target:  5'- -cUGGUcGUcGcGGCCGCccGCCC-CGGCGg -3'
miRNA:   3'- acAUCAuCA-C-CCGGCG--CGGGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 99515 0.67 0.753172
Target:  5'- cGUGGUcaucuccgagacGGUgagcgguccgcccgGGGUCGUGCCCAUGuGCGc -3'
miRNA:   3'- aCAUCA------------UCA--------------CCCGGCGCGGGUGC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 100592 0.76 0.276666
Target:  5'- -----gGGUGGGgaaaCCGCGCCCGCGGCu -3'
miRNA:   3'- acaucaUCACCC----GGCGCGGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 101403 0.68 0.708677
Target:  5'- cGUGGUGGUgcuccgcuuccgaGGGCacaGCggcgGCCgGCGGCGc -3'
miRNA:   3'- aCAUCAUCA-------------CCCGg--CG----CGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 101752 0.67 0.755889
Target:  5'- --aGGUGGUGGcCCggGCGCuCCGuCGGCGg -3'
miRNA:   3'- acaUCAUCACCcGG--CGCG-GGU-GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 101954 0.67 0.755889
Target:  5'- --aAGcUGGUGGcCCGCggGCCCGcCGGCGg -3'
miRNA:   3'- acaUC-AUCACCcGGCG--CGGGU-GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 103312 0.66 0.816364
Target:  5'- cGUAGgacAGgacGGCCGagGCCCggGCGGCGu -3'
miRNA:   3'- aCAUCa--UCac-CCGGCg-CGGG--UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 104788 0.66 0.816364
Target:  5'- ---cGUGGcgGGGUC-CGCgCGCGGCGg -3'
miRNA:   3'- acauCAUCa-CCCGGcGCGgGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 104872 0.69 0.652243
Target:  5'- -----cAGcGGGCgGCGCCgACGGCGc -3'
miRNA:   3'- acaucaUCaCCCGgCGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 110506 0.69 0.632926
Target:  5'- aUGUucgGGuUGcGGCCGCGCgCCGCGaGCGa -3'
miRNA:   3'- -ACAucaUC-AC-CCGGCGCG-GGUGC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 110928 0.67 0.755889
Target:  5'- --------aGGGCCGCGCUCuCGGUGg -3'
miRNA:   3'- acaucaucaCCCGGCGCGGGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 112644 0.67 0.764881
Target:  5'- -uUGGU-GUGGGCCGCGUCguUGGa- -3'
miRNA:   3'- acAUCAuCACCCGGCGCGGguGCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.