Results 21 - 40 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8973 | 3' | -60.7 | NC_002512.2 | + | 181018 | 0.7 | 0.584734 |
Target: 5'- gUGUAGaGG-GaGGcCCGCGUCCugGGCa -3' miRNA: 3'- -ACAUCaUCaC-CC-GGCGCGGGugCCGc -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 115198 | 0.7 | 0.584734 |
Target: 5'- -aUGGU-GUGGGCCGCGCaggCCAgGGaCGu -3' miRNA: 3'- acAUCAuCACCCGGCGCG---GGUgCC-GC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 24228 | 0.7 | 0.594336 |
Target: 5'- cUGUccgAGgcGUcGGGCC-CGCCgACGGCGu -3' miRNA: 3'- -ACA---UCauCA-CCCGGcGCGGgUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 84773 | 0.69 | 0.623263 |
Target: 5'- cGUAGUAGauGGCCGUGUCgGcCGGCa -3' miRNA: 3'- aCAUCAUCacCCGGCGCGGgU-GCCGc -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 110506 | 0.69 | 0.632926 |
Target: 5'- aUGUucgGGuUGcGGCCGCGCgCCGCGaGCGa -3' miRNA: 3'- -ACAucaUC-AC-CCGGCGCG-GGUGC-CGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 149413 | 0.69 | 0.652243 |
Target: 5'- --------cGGGCCGCGaggggaCCGCGGCGg -3' miRNA: 3'- acaucaucaCCCGGCGCg-----GGUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 104872 | 0.69 | 0.652243 |
Target: 5'- -----cAGcGGGCgGCGCCgACGGCGc -3' miRNA: 3'- acaucaUCaCCCGgCGCGGgUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 6314 | 0.69 | 0.652243 |
Target: 5'- cGUcGaGGU-GGCCGcCGCCCGCGGgGg -3' miRNA: 3'- aCAuCaUCAcCCGGC-GCGGGUGCCgC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 9475 | 0.69 | 0.661884 |
Target: 5'- cGUAGgcgGGcGGGCC-CGCgaGCGGCGg -3' miRNA: 3'- aCAUCa--UCaCCCGGcGCGggUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 191459 | 0.68 | 0.671503 |
Target: 5'- gGgcGUugaGGUGGGCCgaguacgagGCGCCggacagCGCGGCGa -3' miRNA: 3'- aCauCA---UCACCCGG---------CGCGG------GUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 115678 | 0.68 | 0.671503 |
Target: 5'- cGUGGgcucGGGCCGgGCCuacagCACGGUGg -3' miRNA: 3'- aCAUCaucaCCCGGCgCGG-----GUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 133576 | 0.68 | 0.690649 |
Target: 5'- cGUGcGgcGaccGGCC-CGCCCGCGGCGg -3' miRNA: 3'- aCAU-CauCac-CCGGcGCGGGUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 101403 | 0.68 | 0.708677 |
Target: 5'- cGUGGUGGUgcuccgcuuccgaGGGCacaGCggcgGCCgGCGGCGc -3' miRNA: 3'- aCAUCAUCA-------------CCCGg--CG----CGGgUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 96519 | 0.68 | 0.709621 |
Target: 5'- --cGG-AG-GGaGCCGCGCCgGCGGUGu -3' miRNA: 3'- acaUCaUCaCC-CGGCGCGGgUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 222222 | 0.67 | 0.728358 |
Target: 5'- --gGGUGGccgucgGGGCCGCGUCCuucgucgccgUGGCGg -3' miRNA: 3'- acaUCAUCa-----CCCGGCGCGGGu---------GCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 173607 | 0.67 | 0.728358 |
Target: 5'- aUGUcgAGUAGcGGGa-GCGCCUccgccGCGGCGg -3' miRNA: 3'- -ACA--UCAUCaCCCggCGCGGG-----UGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 141289 | 0.67 | 0.728358 |
Target: 5'- ---------cGGCCGCGCgCACGGCGg -3' miRNA: 3'- acaucaucacCCGGCGCGgGUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 24834 | 0.67 | 0.728358 |
Target: 5'- --cAGUAGguccGGGcCCGCGgCCGguCGGCGg -3' miRNA: 3'- acaUCAUCa---CCC-GGCGCgGGU--GCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 218096 | 0.67 | 0.73762 |
Target: 5'- cGUGGggaAGcGGGCguCGCGCCCGgGGUc -3' miRNA: 3'- aCAUCa--UCaCCCG--GCGCGGGUgCCGc -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 207099 | 0.67 | 0.73762 |
Target: 5'- uUGUGGUAGcGGGCgCGCaGCUCGuCGGgCa -3' miRNA: 3'- -ACAUCAUCaCCCG-GCG-CGGGU-GCC-Gc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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