miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 2302 0.66 0.782543
Target:  5'- --gGGUGGcgGGGCUcugcuGCGCCgGCGGUc -3'
miRNA:   3'- acaUCAUCa-CCCGG-----CGCGGgUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 223183 0.67 0.773769
Target:  5'- gGUAcGUGGacGGGCCGC-CCgACGGgGa -3'
miRNA:   3'- aCAU-CAUCa-CCCGGCGcGGgUGCCgC- -5'
8973 3' -60.7 NC_002512.2 + 6869 0.67 0.773769
Target:  5'- aGUGGgcGacgacccgucccUGGGCCGUGCCgCucccCGGCa -3'
miRNA:   3'- aCAUCauC------------ACCCGGCGCGG-Gu---GCCGc -5'
8973 3' -60.7 NC_002512.2 + 82347 0.67 0.773769
Target:  5'- gGUAGcGGUGGGCgUGCGgggGCGGCGg -3'
miRNA:   3'- aCAUCaUCACCCG-GCGCgggUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 133158 0.67 0.764881
Target:  5'- cGUccGGUucccGcGGGCCG-GCCCGCGGgGg -3'
miRNA:   3'- aCA--UCAu---CaCCCGGCgCGGGUGCCgC- -5'
8973 3' -60.7 NC_002512.2 + 112644 0.67 0.764881
Target:  5'- -uUGGU-GUGGGCCGCGUCguUGGa- -3'
miRNA:   3'- acAUCAuCACCCGGCGCGGguGCCgc -5'
8973 3' -60.7 NC_002512.2 + 127667 0.67 0.764881
Target:  5'- --cGGUcGaGGGCCGCuccGgCCGCGGCGa -3'
miRNA:   3'- acaUCAuCaCCCGGCG---CgGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 113407 0.67 0.762194
Target:  5'- gGUAGUGcgcGUGGGCCGCcgggaucaccGCCCcguccccgagcuggGUGGCGa -3'
miRNA:   3'- aCAUCAU---CACCCGGCG----------CGGG--------------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 101752 0.67 0.755889
Target:  5'- --aGGUGGUGGcCCggGCGCuCCGuCGGCGg -3'
miRNA:   3'- acaUCAUCACCcGG--CGCG-GGU-GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 16244 0.67 0.755889
Target:  5'- cGUcGUcGUc-GCCGuCGCCCGCGGCGg -3'
miRNA:   3'- aCAuCAuCAccCGGC-GCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 101954 0.67 0.755889
Target:  5'- --aAGcUGGUGGcCCGCggGCCCGcCGGCGg -3'
miRNA:   3'- acaUC-AUCACCcGGCG--CGGGU-GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 110928 0.67 0.755889
Target:  5'- --------aGGGCCGCGCUCuCGGUGg -3'
miRNA:   3'- acaucaucaCCCGGCGCGGGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 99515 0.67 0.753172
Target:  5'- cGUGGUcaucuccgagacGGUgagcgguccgcccgGGGUCGUGCCCAUGuGCGc -3'
miRNA:   3'- aCAUCA------------UCA--------------CCCGGCGCGGGUGC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 223522 0.67 0.746799
Target:  5'- cGgcGgAGaacGGCaCGCGCCCGCGGCc -3'
miRNA:   3'- aCauCaUCac-CCG-GCGCGGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 200559 0.67 0.746799
Target:  5'- gGUAucGGgGGGaauCGCGCCCGCGGUc -3'
miRNA:   3'- aCAUcaUCaCCCg--GCGCGGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 153329 0.67 0.746799
Target:  5'- gGUGGUuccgcUGGGCCG-GUCCGgguCGGCGg -3'
miRNA:   3'- aCAUCAuc---ACCCGGCgCGGGU---GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 131990 0.67 0.746799
Target:  5'- --aGGUcgcGUGGGCCGC-CCCG-GGCGc -3'
miRNA:   3'- acaUCAu--CACCCGGCGcGGGUgCCGC- -5'
8973 3' -60.7 NC_002512.2 + 207099 0.67 0.73762
Target:  5'- uUGUGGUAGcGGGCgCGCaGCUCGuCGGgCa -3'
miRNA:   3'- -ACAUCAUCaCCCG-GCG-CGGGU-GCC-Gc -5'
8973 3' -60.7 NC_002512.2 + 218096 0.67 0.73762
Target:  5'- cGUGGggaAGcGGGCguCGCGCCCGgGGUc -3'
miRNA:   3'- aCAUCa--UCaCCCG--GCGCGGGUgCCGc -5'
8973 3' -60.7 NC_002512.2 + 24834 0.67 0.728358
Target:  5'- --cAGUAGguccGGGcCCGCGgCCGguCGGCGg -3'
miRNA:   3'- acaUCAUCa---CCC-GGCGCgGGU--GCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.