miRNA display CGI


Results 41 - 60 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 173607 0.67 0.728358
Target:  5'- aUGUcgAGUAGcGGGa-GCGCCUccgccGCGGCGg -3'
miRNA:   3'- -ACA--UCAUCaCCCggCGCGGG-----UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 222222 0.67 0.728358
Target:  5'- --gGGUGGccgucgGGGCCGCGUCCuucgucgccgUGGCGg -3'
miRNA:   3'- acaUCAUCa-----CCCGGCGCGGGu---------GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 141289 0.67 0.728358
Target:  5'- ---------cGGCCGCGCgCACGGCGg -3'
miRNA:   3'- acaucaucacCCGGCGCGgGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 96519 0.68 0.709621
Target:  5'- --cGG-AG-GGaGCCGCGCCgGCGGUGu -3'
miRNA:   3'- acaUCaUCaCC-CGGCGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 101403 0.68 0.708677
Target:  5'- cGUGGUGGUgcuccgcuuccgaGGGCacaGCggcgGCCgGCGGCGc -3'
miRNA:   3'- aCAUCAUCA-------------CCCGg--CG----CGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 133576 0.68 0.690649
Target:  5'- cGUGcGgcGaccGGCC-CGCCCGCGGCGg -3'
miRNA:   3'- aCAU-CauCac-CCGGcGCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 115678 0.68 0.671503
Target:  5'- cGUGGgcucGGGCCGgGCCuacagCACGGUGg -3'
miRNA:   3'- aCAUCaucaCCCGGCgCGG-----GUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 191459 0.68 0.671503
Target:  5'- gGgcGUugaGGUGGGCCgaguacgagGCGCCggacagCGCGGCGa -3'
miRNA:   3'- aCauCA---UCACCCGG---------CGCGG------GUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 9475 0.69 0.661884
Target:  5'- cGUAGgcgGGcGGGCC-CGCgaGCGGCGg -3'
miRNA:   3'- aCAUCa--UCaCCCGGcGCGggUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 104872 0.69 0.652243
Target:  5'- -----cAGcGGGCgGCGCCgACGGCGc -3'
miRNA:   3'- acaucaUCaCCCGgCGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 6314 0.69 0.652243
Target:  5'- cGUcGaGGU-GGCCGcCGCCCGCGGgGg -3'
miRNA:   3'- aCAuCaUCAcCCGGC-GCGGGUGCCgC- -5'
8973 3' -60.7 NC_002512.2 + 149413 0.69 0.652243
Target:  5'- --------cGGGCCGCGaggggaCCGCGGCGg -3'
miRNA:   3'- acaucaucaCCCGGCGCg-----GGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 110506 0.69 0.632926
Target:  5'- aUGUucgGGuUGcGGCCGCGCgCCGCGaGCGa -3'
miRNA:   3'- -ACAucaUC-AC-CCGGCGCG-GGUGC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 84773 0.69 0.623263
Target:  5'- cGUAGUAGauGGCCGUGUCgGcCGGCa -3'
miRNA:   3'- aCAUCAUCacCCGGCGCGGgU-GCCGc -5'
8973 3' -60.7 NC_002512.2 + 24228 0.7 0.594336
Target:  5'- cUGUccgAGgcGUcGGGCC-CGCCgACGGCGu -3'
miRNA:   3'- -ACA---UCauCA-CCCGGcGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 115198 0.7 0.584734
Target:  5'- -aUGGU-GUGGGCCGCGCaggCCAgGGaCGu -3'
miRNA:   3'- acAUCAuCACCCGGCGCG---GGUgCC-GC- -5'
8973 3' -60.7 NC_002512.2 + 181018 0.7 0.584734
Target:  5'- gUGUAGaGG-GaGGcCCGCGUCCugGGCa -3'
miRNA:   3'- -ACAUCaUCaC-CC-GGCGCGGGugCCGc -5'
8973 3' -60.7 NC_002512.2 + 137196 0.7 0.575164
Target:  5'- cGUcGGUccgcccGGUGGGCgGCGCgCC-CGGCGc -3'
miRNA:   3'- aCA-UCA------UCACCCGgCGCG-GGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 158549 0.7 0.556136
Target:  5'- gGUGGaccugcUGGUGGGCCGC-UCCugGcGCGa -3'
miRNA:   3'- aCAUC------AUCACCCGGCGcGGGugC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 96191 0.71 0.509468
Target:  5'- gGUGGUccGGgagGcGGCCGCGaggucggCCACGGCGg -3'
miRNA:   3'- aCAUCA--UCa--C-CCGGCGCg------GGUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.