miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 199332 1.09 0.00183
Target:  5'- uUGUAGUAGUGGGCCGCGCCCACGGCGa -3'
miRNA:   3'- -ACAUCAUCACCCGGCGCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 36881 0.77 0.236225
Target:  5'- --aGGUGGgcaGGGCgGCGCCCGCGGUc -3'
miRNA:   3'- acaUCAUCa--CCCGgCGCGGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 100592 0.76 0.276666
Target:  5'- -----gGGUGGGgaaaCCGCGCCCGCGGCu -3'
miRNA:   3'- acaucaUCACCC----GGCGCGGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 226692 0.76 0.282874
Target:  5'- --------cGGGCCGuCGCCCGCGGCGg -3'
miRNA:   3'- acaucaucaCCCGGC-GCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 14619 0.75 0.314893
Target:  5'- aGUAGUGGcgGaGGCCGCGCUUgaggaagGCGGCGu -3'
miRNA:   3'- aCAUCAUCa-C-CCGGCGCGGG-------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 80913 0.75 0.315574
Target:  5'- --aGGUGGUGGGUCgcgcggGCGCCCuccCGGCGg -3'
miRNA:   3'- acaUCAUCACCCGG------CGCGGGu--GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 82031 0.75 0.336526
Target:  5'- --gGGUcG-GGGUCGCGCCgGCGGCGg -3'
miRNA:   3'- acaUCAuCaCCCGGCGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 136604 0.74 0.358474
Target:  5'- cGUacaGGUAGcGGGCCGCGCCCucCaGCGu -3'
miRNA:   3'- aCA---UCAUCaCCCGGCGCGGGu-GcCGC- -5'
8973 3' -60.7 NC_002512.2 + 4646 0.74 0.381404
Target:  5'- --cGGUGGUGGGgaUCGCGCUaACGGCGg -3'
miRNA:   3'- acaUCAUCACCC--GGCGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 86646 0.74 0.381404
Target:  5'- gUGUGGUGGaucgcgGuGGCCGCGUCCgagcggACGGCGc -3'
miRNA:   3'- -ACAUCAUCa-----C-CCGGCGCGGG------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 168119 0.73 0.397225
Target:  5'- gGUAGgagAG-GGGCC-CGgCCGCGGCGa -3'
miRNA:   3'- aCAUCa--UCaCCCGGcGCgGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 203322 0.73 0.405292
Target:  5'- cGUAGUAGgccaGGGCCGCgaucuugcaGCCCucgGGCGa -3'
miRNA:   3'- aCAUCAUCa---CCCGGCG---------CGGGug-CCGC- -5'
8973 3' -60.7 NC_002512.2 + 130138 0.73 0.405292
Target:  5'- --gGGUGGUGucgcGGCCGCgggGCCCGgCGGCGg -3'
miRNA:   3'- acaUCAUCAC----CCGGCG---CGGGU-GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 82318 0.73 0.430101
Target:  5'- gGU-GUAGaGGGCCGCgggccGCCC-CGGCGg -3'
miRNA:   3'- aCAuCAUCaCCCGGCG-----CGGGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 222538 0.71 0.491256
Target:  5'- cGUcGcGGUGGGCCGgG-CUACGGCGa -3'
miRNA:   3'- aCAuCaUCACCCGGCgCgGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 37264 0.71 0.491256
Target:  5'- cGUAGaaGGUGaGGCCGCcgucGCCCgccGCGGCGc -3'
miRNA:   3'- aCAUCa-UCAC-CCGGCG----CGGG---UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 157075 0.71 0.491256
Target:  5'- --gGGUccgGGGUCgccgGCGCCCACGGCGg -3'
miRNA:   3'- acaUCAucaCCCGG----CGCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 96191 0.71 0.509468
Target:  5'- gGUGGUccGGgagGcGGCCGCGaggucggCCACGGCGg -3'
miRNA:   3'- aCAUCA--UCa--C-CCGGCGCg------GGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 158549 0.7 0.556136
Target:  5'- gGUGGaccugcUGGUGGGCCGC-UCCugGcGCGa -3'
miRNA:   3'- aCAUC------AUCACCCGGCGcGGGugC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 137196 0.7 0.575164
Target:  5'- cGUcGGUccgcccGGUGGGCgGCGCgCC-CGGCGc -3'
miRNA:   3'- aCA-UCA------UCACCCGgCGCG-GGuGCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.