miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 101752 0.67 0.755889
Target:  5'- --aGGUGGUGGcCCggGCGCuCCGuCGGCGg -3'
miRNA:   3'- acaUCAUCACCcGG--CGCG-GGU-GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 84773 0.69 0.623263
Target:  5'- cGUAGUAGauGGCCGUGUCgGcCGGCa -3'
miRNA:   3'- aCAUCAUCacCCGGCGCGGgU-GCCGc -5'
8973 3' -60.7 NC_002512.2 + 110506 0.69 0.632926
Target:  5'- aUGUucgGGuUGcGGCCGCGCgCCGCGaGCGa -3'
miRNA:   3'- -ACAucaUC-AC-CCGGCGCG-GGUGC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 6314 0.69 0.652243
Target:  5'- cGUcGaGGU-GGCCGcCGCCCGCGGgGg -3'
miRNA:   3'- aCAuCaUCAcCCGGC-GCGGGUGCCgC- -5'
8973 3' -60.7 NC_002512.2 + 104872 0.69 0.652243
Target:  5'- -----cAGcGGGCgGCGCCgACGGCGc -3'
miRNA:   3'- acaucaUCaCCCGgCGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 9475 0.69 0.661884
Target:  5'- cGUAGgcgGGcGGGCC-CGCgaGCGGCGg -3'
miRNA:   3'- aCAUCa--UCaCCCGGcGCGggUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 24834 0.67 0.728358
Target:  5'- --cAGUAGguccGGGcCCGCGgCCGguCGGCGg -3'
miRNA:   3'- acaUCAUCa---CCC-GGCGCgGGU--GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 99515 0.67 0.753172
Target:  5'- cGUGGUcaucuccgagacGGUgagcgguccgcccgGGGUCGUGCCCAUGuGCGc -3'
miRNA:   3'- aCAUCA------------UCA--------------CCCGGCGCGGGUGC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 16244 0.67 0.755889
Target:  5'- cGUcGUcGUc-GCCGuCGCCCGCGGCGg -3'
miRNA:   3'- aCAuCAuCAccCGGC-GCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 24228 0.7 0.594336
Target:  5'- cUGUccgAGgcGUcGGGCC-CGCCgACGGCGu -3'
miRNA:   3'- -ACA---UCauCA-CCCGGcGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 115198 0.7 0.584734
Target:  5'- -aUGGU-GUGGGCCGCGCaggCCAgGGaCGu -3'
miRNA:   3'- acAUCAuCACCCGGCGCG---GGUgCC-GC- -5'
8973 3' -60.7 NC_002512.2 + 137196 0.7 0.575164
Target:  5'- cGUcGGUccgcccGGUGGGCgGCGCgCC-CGGCGc -3'
miRNA:   3'- aCA-UCA------UCACCCGgCGCG-GGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 14619 0.75 0.314893
Target:  5'- aGUAGUGGcgGaGGCCGCGCUUgaggaagGCGGCGu -3'
miRNA:   3'- aCAUCAUCa-C-CCGGCGCGGG-------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 80913 0.75 0.315574
Target:  5'- --aGGUGGUGGGUCgcgcggGCGCCCuccCGGCGg -3'
miRNA:   3'- acaUCAUCACCCGG------CGCGGGu--GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 82031 0.75 0.336526
Target:  5'- --gGGUcG-GGGUCGCGCCgGCGGCGg -3'
miRNA:   3'- acaUCAuCaCCCGGCGCGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 136604 0.74 0.358474
Target:  5'- cGUacaGGUAGcGGGCCGCGCCCucCaGCGu -3'
miRNA:   3'- aCA---UCAUCaCCCGGCGCGGGu-GcCGC- -5'
8973 3' -60.7 NC_002512.2 + 86646 0.74 0.381404
Target:  5'- gUGUGGUGGaucgcgGuGGCCGCGUCCgagcggACGGCGc -3'
miRNA:   3'- -ACAUCAUCa-----C-CCGGCGCGGG------UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 130138 0.73 0.405292
Target:  5'- --gGGUGGUGucgcGGCCGCgggGCCCGgCGGCGg -3'
miRNA:   3'- acaUCAUCAC----CCGGCG---CGGGU-GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 82318 0.73 0.430101
Target:  5'- gGU-GUAGaGGGCCGCgggccGCCC-CGGCGg -3'
miRNA:   3'- aCAuCAUCaCCCGGCG-----CGGGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 37264 0.71 0.491256
Target:  5'- cGUAGaaGGUGaGGCCGCcgucGCCCgccGCGGCGc -3'
miRNA:   3'- aCAUCa-UCAC-CCGGCG----CGGG---UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.