Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8973 | 3' | -60.7 | NC_002512.2 | + | 2302 | 0.66 | 0.782543 |
Target: 5'- --gGGUGGcgGGGCUcugcuGCGCCgGCGGUc -3' miRNA: 3'- acaUCAUCa-CCCGG-----CGCGGgUGCCGc -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 2456 | 0.66 | 0.791198 |
Target: 5'- -----aGGUGaccgcGGcCCGCGCCCGCGcGCGa -3' miRNA: 3'- acaucaUCAC-----CC-GGCGCGGGUGC-CGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 3304 | 0.66 | 0.799724 |
Target: 5'- --------cGGGCCGCGCCCuccUGGCc -3' miRNA: 3'- acaucaucaCCCGGCGCGGGu--GCCGc -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 4646 | 0.74 | 0.381404 |
Target: 5'- --cGGUGGUGGGgaUCGCGCUaACGGCGg -3' miRNA: 3'- acaUCAUCACCC--GGCGCGGgUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 6314 | 0.69 | 0.652243 |
Target: 5'- cGUcGaGGU-GGCCGcCGCCCGCGGgGg -3' miRNA: 3'- aCAuCaUCAcCCGGC-GCGGGUGCCgC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 6869 | 0.67 | 0.773769 |
Target: 5'- aGUGGgcGacgacccgucccUGGGCCGUGCCgCucccCGGCa -3' miRNA: 3'- aCAUCauC------------ACCCGGCGCGG-Gu---GCCGc -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 9475 | 0.69 | 0.661884 |
Target: 5'- cGUAGgcgGGcGGGCC-CGCgaGCGGCGg -3' miRNA: 3'- aCAUCa--UCaCCCGGcGCGggUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 14619 | 0.75 | 0.314893 |
Target: 5'- aGUAGUGGcgGaGGCCGCGCUUgaggaagGCGGCGu -3' miRNA: 3'- aCAUCAUCa-C-CCGGCGCGGG-------UGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 16244 | 0.67 | 0.755889 |
Target: 5'- cGUcGUcGUc-GCCGuCGCCCGCGGCGg -3' miRNA: 3'- aCAuCAuCAccCGGC-GCGGGUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 24228 | 0.7 | 0.594336 |
Target: 5'- cUGUccgAGgcGUcGGGCC-CGCCgACGGCGu -3' miRNA: 3'- -ACA---UCauCA-CCCGGcGCGGgUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 24834 | 0.67 | 0.728358 |
Target: 5'- --cAGUAGguccGGGcCCGCGgCCGguCGGCGg -3' miRNA: 3'- acaUCAUCa---CCC-GGCGCgGGU--GCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 29014 | 0.66 | 0.791198 |
Target: 5'- ---cGUGGUGGGCgGCGUggucgacgCCauGCGGCa -3' miRNA: 3'- acauCAUCACCCGgCGCG--------GG--UGCCGc -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 29886 | 0.66 | 0.791198 |
Target: 5'- --cGGUGcacGUGGGCCGCucgucCCCGCcgGGCGc -3' miRNA: 3'- acaUCAU---CACCCGGCGc----GGGUG--CCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 36881 | 0.77 | 0.236225 |
Target: 5'- --aGGUGGgcaGGGCgGCGCCCGCGGUc -3' miRNA: 3'- acaUCAUCa--CCCGgCGCGGGUGCCGc -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 37264 | 0.71 | 0.491256 |
Target: 5'- cGUAGaaGGUGaGGCCGCcgucGCCCgccGCGGCGc -3' miRNA: 3'- aCAUCa-UCAC-CCGGCG----CGGG---UGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 58200 | 0.66 | 0.824464 |
Target: 5'- -cUGGUgAGUGGGCgcggCGCGCaccCCGCGcGCGu -3' miRNA: 3'- acAUCA-UCACCCG----GCGCG---GGUGC-CGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 80913 | 0.75 | 0.315574 |
Target: 5'- --aGGUGGUGGGUCgcgcggGCGCCCuccCGGCGg -3' miRNA: 3'- acaUCAUCACCCGG------CGCGGGu--GCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 82031 | 0.75 | 0.336526 |
Target: 5'- --gGGUcG-GGGUCGCGCCgGCGGCGg -3' miRNA: 3'- acaUCAuCaCCCGGCGCGGgUGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 82318 | 0.73 | 0.430101 |
Target: 5'- gGU-GUAGaGGGCCGCgggccGCCC-CGGCGg -3' miRNA: 3'- aCAuCAUCaCCCGGCG-----CGGGuGCCGC- -5' |
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8973 | 3' | -60.7 | NC_002512.2 | + | 82347 | 0.67 | 0.773769 |
Target: 5'- gGUAGcGGUGGGCgUGCGgggGCGGCGg -3' miRNA: 3'- aCAUCaUCACCCG-GCGCgggUGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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