miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 226692 0.76 0.282874
Target:  5'- --------cGGGCCGuCGCCCGCGGCGg -3'
miRNA:   3'- acaucaucaCCCGGC-GCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 223522 0.67 0.746799
Target:  5'- cGgcGgAGaacGGCaCGCGCCCGCGGCc -3'
miRNA:   3'- aCauCaUCac-CCG-GCGCGGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 223183 0.67 0.773769
Target:  5'- gGUAcGUGGacGGGCCGC-CCgACGGgGa -3'
miRNA:   3'- aCAU-CAUCa-CCCGGCGcGGgUGCCgC- -5'
8973 3' -60.7 NC_002512.2 + 222538 0.71 0.491256
Target:  5'- cGUcGcGGUGGGCCGgG-CUACGGCGa -3'
miRNA:   3'- aCAuCaUCACCCGGCgCgGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 222222 0.67 0.728358
Target:  5'- --gGGUGGccgucgGGGCCGCGUCCuucgucgccgUGGCGg -3'
miRNA:   3'- acaUCAUCa-----CCCGGCGCGGGu---------GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 218096 0.67 0.73762
Target:  5'- cGUGGggaAGcGGGCguCGCGCCCGgGGUc -3'
miRNA:   3'- aCAUCa--UCaCCCG--GCGCGGGUgCCGc -5'
8973 3' -60.7 NC_002512.2 + 207099 0.67 0.73762
Target:  5'- uUGUGGUAGcGGGCgCGCaGCUCGuCGGgCa -3'
miRNA:   3'- -ACAUCAUCaCCCG-GCG-CGGGU-GCC-Gc -5'
8973 3' -60.7 NC_002512.2 + 205028 0.66 0.799724
Target:  5'- --cGGUcG-GGGCCGCGUCCGCcGCc -3'
miRNA:   3'- acaUCAuCaCCCGGCGCGGGUGcCGc -5'
8973 3' -60.7 NC_002512.2 + 203322 0.73 0.405292
Target:  5'- cGUAGUAGgccaGGGCCGCgaucuugcaGCCCucgGGCGa -3'
miRNA:   3'- aCAUCAUCa---CCCGGCG---------CGGGug-CCGC- -5'
8973 3' -60.7 NC_002512.2 + 200559 0.67 0.746799
Target:  5'- gGUAucGGgGGGaauCGCGCCCGCGGUc -3'
miRNA:   3'- aCAUcaUCaCCCg--GCGCGGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 199332 1.09 0.00183
Target:  5'- uUGUAGUAGUGGGCCGCGCCCACGGCGa -3'
miRNA:   3'- -ACAUCAUCACCCGGCGCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 192871 0.66 0.794624
Target:  5'- aGUGGUccccGG-GGacgcauauaagcgccGUCGCGCuCCGCGGCGg -3'
miRNA:   3'- aCAUCA----UCaCC---------------CGGCGCG-GGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 191459 0.68 0.671503
Target:  5'- gGgcGUugaGGUGGGCCgaguacgagGCGCCggacagCGCGGCGa -3'
miRNA:   3'- aCauCA---UCACCCGG---------CGCGG------GUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 181018 0.7 0.584734
Target:  5'- gUGUAGaGG-GaGGcCCGCGUCCugGGCa -3'
miRNA:   3'- -ACAUCaUCaC-CC-GGCGCGGGugCCGc -5'
8973 3' -60.7 NC_002512.2 + 173607 0.67 0.728358
Target:  5'- aUGUcgAGUAGcGGGa-GCGCCUccgccGCGGCGg -3'
miRNA:   3'- -ACA--UCAUCaCCCggCGCGGG-----UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 168119 0.73 0.397225
Target:  5'- gGUAGgagAG-GGGCC-CGgCCGCGGCGa -3'
miRNA:   3'- aCAUCa--UCaCCCGGcGCgGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 158549 0.7 0.556136
Target:  5'- gGUGGaccugcUGGUGGGCCGC-UCCugGcGCGa -3'
miRNA:   3'- aCAUC------AUCACCCGGCGcGGGugC-CGC- -5'
8973 3' -60.7 NC_002512.2 + 157075 0.71 0.491256
Target:  5'- --gGGUccgGGGUCgccgGCGCCCACGGCGg -3'
miRNA:   3'- acaUCAucaCCCGG----CGCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 154730 0.66 0.791198
Target:  5'- cGgcGUugcGUccGcGGCCGCGUCCgACGGCGu -3'
miRNA:   3'- aCauCAu--CA--C-CCGGCGCGGG-UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 154637 0.66 0.824464
Target:  5'- cGUGGggacGGgacGcGGCCGCGCUCgucaccgcgACGGCGu -3'
miRNA:   3'- aCAUCa---UCa--C-CCGGCGCGGG---------UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.