miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 3' -60.7 NC_002512.2 + 98136 0.66 0.824464
Target:  5'- -cUGGUcGUcGcGGCCGCccGCCC-CGGCGg -3'
miRNA:   3'- acAUCAuCA-C-CCGGCG--CGGGuGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 207099 0.67 0.73762
Target:  5'- uUGUGGUAGcGGGCgCGCaGCUCGuCGGgCa -3'
miRNA:   3'- -ACAUCAUCaCCCG-GCG-CGGGU-GCC-Gc -5'
8973 3' -60.7 NC_002512.2 + 222222 0.67 0.728358
Target:  5'- --gGGUGGccgucgGGGCCGCGUCCuucgucgccgUGGCGg -3'
miRNA:   3'- acaUCAUCa-----CCCGGCGCGGGu---------GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 199332 1.09 0.00183
Target:  5'- uUGUAGUAGUGGGCCGCGCCCACGGCGa -3'
miRNA:   3'- -ACAUCAUCACCCGGCGCGGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 89122 0.66 0.799724
Target:  5'- aGgcGUAGaGGGCC-UGCUcaCACGGCGu -3'
miRNA:   3'- aCauCAUCaCCCGGcGCGG--GUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 192871 0.66 0.794624
Target:  5'- aGUGGUccccGG-GGacgcauauaagcgccGUCGCGCuCCGCGGCGg -3'
miRNA:   3'- aCAUCA----UCaCC---------------CGGCGCG-GGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 146264 0.66 0.791198
Target:  5'- ----cUGGUGGGCCGCcugaacgccguGUCCAacccCGGCGa -3'
miRNA:   3'- acaucAUCACCCGGCG-----------CGGGU----GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 90501 0.66 0.791198
Target:  5'- --cGGgaucgGGGCCGagGCCgGCGGCGg -3'
miRNA:   3'- acaUCauca-CCCGGCg-CGGgUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 112644 0.67 0.764881
Target:  5'- -uUGGU-GUGGGCCGCGUCguUGGa- -3'
miRNA:   3'- acAUCAuCACCCGGCGCGGguGCCgc -5'
8973 3' -60.7 NC_002512.2 + 218096 0.67 0.73762
Target:  5'- cGUGGggaAGcGGGCguCGCGCCCGgGGUc -3'
miRNA:   3'- aCAUCa--UCaCCCG--GCGCGGGUgCCGc -5'
8973 3' -60.7 NC_002512.2 + 200559 0.67 0.746799
Target:  5'- gGUAucGGgGGGaauCGCGCCCGCGGUc -3'
miRNA:   3'- aCAUcaUCaCCCg--GCGCGGGUGCCGc -5'
8973 3' -60.7 NC_002512.2 + 127667 0.67 0.764881
Target:  5'- --cGGUcGaGGGCCGCuccGgCCGCGGCGa -3'
miRNA:   3'- acaUCAuCaCCCGGCG---CgGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 127350 0.66 0.819622
Target:  5'- aGUcGGUAGggaaaccggGGGCCugacccccgacggccGCGacuCCCGCGGCGg -3'
miRNA:   3'- aCA-UCAUCa--------CCCGG---------------CGC---GGGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 153329 0.67 0.746799
Target:  5'- gGUGGUuccgcUGGGCCG-GUCCGgguCGGCGg -3'
miRNA:   3'- aCAUCAuc---ACCCGGCgCGGGU---GCCGC- -5'
8973 3' -60.7 NC_002512.2 + 103312 0.66 0.816364
Target:  5'- cGUAGgacAGgacGGCCGagGCCCggGCGGCGu -3'
miRNA:   3'- aCAUCa--UCac-CCGGCg-CGGG--UGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 223183 0.67 0.773769
Target:  5'- gGUAcGUGGacGGGCCGC-CCgACGGgGa -3'
miRNA:   3'- aCAU-CAUCa-CCCGGCGcGGgUGCCgC- -5'
8973 3' -60.7 NC_002512.2 + 131990 0.67 0.746799
Target:  5'- --aGGUcgcGUGGGCCGC-CCCG-GGCGc -3'
miRNA:   3'- acaUCAu--CACCCGGCGcGGGUgCCGC- -5'
8973 3' -60.7 NC_002512.2 + 141289 0.67 0.728358
Target:  5'- ---------cGGCCGCGCgCACGGCGg -3'
miRNA:   3'- acaucaucacCCGGCGCGgGUGCCGC- -5'
8973 3' -60.7 NC_002512.2 + 205028 0.66 0.799724
Target:  5'- --cGGUcG-GGGCCGCGUCCGCcGCc -3'
miRNA:   3'- acaUCAuCaCCCGGCGCGGGUGcCGc -5'
8973 3' -60.7 NC_002512.2 + 154730 0.66 0.791198
Target:  5'- cGgcGUugcGUccGcGGCCGCGUCCgACGGCGu -3'
miRNA:   3'- aCauCAu--CA--C-CCGGCGCGGG-UGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.