miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 5' -61.3 NC_002512.2 + 120528 0.67 0.684166
Target:  5'- gGCgCGGCUuucccCCGGCGGCUcCCUCGCa-- -3'
miRNA:   3'- -UG-GCCGA-----GGUCGUCGAcGGAGUGgaa -5'
8973 5' -61.3 NC_002512.2 + 124818 0.67 0.63501
Target:  5'- cGCCGGCUucuUCGGCuGCgUGCCggaCACCg- -3'
miRNA:   3'- -UGGCCGA---GGUCGuCG-ACGGa--GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 126445 0.68 0.614296
Target:  5'- gGCCGGCgaCGGCGGCgGCCgccuuguUCGCCg- -3'
miRNA:   3'- -UGGCCGagGUCGUCGaCGG-------AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 126521 0.74 0.285085
Target:  5'- -gCGGCUCCGGCGGcCUGaCCUCgACCg- -3'
miRNA:   3'- ugGCCGAGGUCGUC-GAC-GGAG-UGGaa -5'
8973 5' -61.3 NC_002512.2 + 129946 0.71 0.419499
Target:  5'- cACCGGCggCAGCAGCaGCCgaCGCCg- -3'
miRNA:   3'- -UGGCCGagGUCGUCGaCGGa-GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 137257 0.67 0.664569
Target:  5'- cCCGGCgCCGGCGGCcGCCgu-CCg- -3'
miRNA:   3'- uGGCCGaGGUCGUCGaCGGaguGGaa -5'
8973 5' -61.3 NC_002512.2 + 145615 0.67 0.674384
Target:  5'- gGCgGGCgUUCGGCccGCUGCC-CGCCUUc -3'
miRNA:   3'- -UGgCCG-AGGUCGu-CGACGGaGUGGAA- -5'
8973 5' -61.3 NC_002512.2 + 148854 0.69 0.537343
Target:  5'- uGCCGGaacgCCGGCuGCcGCCUcCGCCUg -3'
miRNA:   3'- -UGGCCga--GGUCGuCGaCGGA-GUGGAa -5'
8973 5' -61.3 NC_002512.2 + 149882 0.76 0.205888
Target:  5'- uCCGGCUCCGGCugccGCUGCCUgGaCCUc -3'
miRNA:   3'- uGGCCGAGGUCGu---CGACGGAgU-GGAa -5'
8973 5' -61.3 NC_002512.2 + 167016 0.66 0.713241
Target:  5'- cACCGGCgUCgCGGCcccgauGCUGCCcUGCCUg -3'
miRNA:   3'- -UGGCCG-AG-GUCGu-----CGACGGaGUGGAa -5'
8973 5' -61.3 NC_002512.2 + 169546 0.75 0.260256
Target:  5'- cCCGGCUgcCCGGCGGCgugGCCuUCGCCg- -3'
miRNA:   3'- uGGCCGA--GGUCGUCGa--CGG-AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 170136 0.66 0.741738
Target:  5'- -aCGGCaccgucuccucgUCCAGCAGCaggGCCcggaUCACCg- -3'
miRNA:   3'- ugGCCG------------AGGUCGUCGa--CGG----AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 179442 0.66 0.732317
Target:  5'- gGCCGGCgucuucuggacaUCCGGC-GCcgGCCUCuuCCUg -3'
miRNA:   3'- -UGGCCG------------AGGUCGuCGa-CGGAGu-GGAa -5'
8973 5' -61.3 NC_002512.2 + 182630 0.66 0.73137
Target:  5'- gGCCGcGCgaucuucUCCAGCGccuGCgucucgGCCUCGCCg- -3'
miRNA:   3'- -UGGC-CG-------AGGUCGU---CGa-----CGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 187744 0.67 0.63501
Target:  5'- gGCCGccaUCCAGCAGCUGCgUUGCg-- -3'
miRNA:   3'- -UGGCcg-AGGUCGUCGACGgAGUGgaa -5'
8973 5' -61.3 NC_002512.2 + 188649 0.66 0.722815
Target:  5'- cGCCGGCggCGGCGGCgGCCcgUCGuCCg- -3'
miRNA:   3'- -UGGCCGagGUCGUCGaCGG--AGU-GGaa -5'
8973 5' -61.3 NC_002512.2 + 188774 0.7 0.463087
Target:  5'- -gCGGUUCCGGCGGCggcuccgGCCUCGgCg- -3'
miRNA:   3'- ugGCCGAGGUCGUCGa------CGGAGUgGaa -5'
8973 5' -61.3 NC_002512.2 + 190114 0.71 0.419499
Target:  5'- uCCGGCgcuuccaCGGCAGCUGCgugcugCUCGCCUg -3'
miRNA:   3'- uGGCCGag-----GUCGUCGACG------GAGUGGAa -5'
8973 5' -61.3 NC_002512.2 + 192649 0.67 0.65473
Target:  5'- -aCGGCUCgCgggGGCGGCUGCCcCACUc- -3'
miRNA:   3'- ugGCCGAG-G---UCGUCGACGGaGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 193333 0.76 0.205888
Target:  5'- cCCGGCUCCAGCGGaacgGgCUCGCCa- -3'
miRNA:   3'- uGGCCGAGGUCGUCga--CgGAGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.