miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 5' -61.3 NC_002512.2 + 30505 0.67 0.664569
Target:  5'- cACCGGUUCgugaaggugaGGCAGCUGCUggaGCCg- -3'
miRNA:   3'- -UGGCCGAGg---------UCGUCGACGGag-UGGaa -5'
8973 5' -61.3 NC_002512.2 + 34970 0.67 0.644875
Target:  5'- gACCGGgUCCGGCuGg-GCCUCGCg-- -3'
miRNA:   3'- -UGGCCgAGGUCGuCgaCGGAGUGgaa -5'
8973 5' -61.3 NC_002512.2 + 39750 0.66 0.693908
Target:  5'- cCCGGUgggCCAggcgagcagcacGCAGCUGCCguggaagCGCCg- -3'
miRNA:   3'- uGGCCGa--GGU------------CGUCGACGGa------GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 45487 0.67 0.664569
Target:  5'- gGCCGaGCgccccCCGGCGGCgGCCaCGCCg- -3'
miRNA:   3'- -UGGC-CGa----GGUCGUCGaCGGaGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 49680 0.67 0.644875
Target:  5'- gGCCGGCagCCAGUgcaugucgaaCUGCUUCGCCUUc -3'
miRNA:   3'- -UGGCCGa-GGUCGuc--------GACGGAGUGGAA- -5'
8973 5' -61.3 NC_002512.2 + 62143 0.7 0.49035
Target:  5'- cGCCGacGC-CCGGCAGCU-CCUCGCCc- -3'
miRNA:   3'- -UGGC--CGaGGUCGUCGAcGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 69526 0.66 0.732316
Target:  5'- gGCCGuGCga-GGCauugAGCUGCCUCAUCg- -3'
miRNA:   3'- -UGGC-CGaggUCG----UCGACGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 73817 0.68 0.576017
Target:  5'- uGCCGGCgcCCGGCGuCgaugaGCCUCGCCg- -3'
miRNA:   3'- -UGGCCGa-GGUCGUcGa----CGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 80372 0.67 0.63501
Target:  5'- gGCCGGCccgcUCCGGCcGCgGCCUUuugACCa- -3'
miRNA:   3'- -UGGCCG----AGGUCGuCGaCGGAG---UGGaa -5'
8973 5' -61.3 NC_002512.2 + 81040 0.68 0.576017
Target:  5'- aGCCGGCguUCCGGCAGCggugcGCCcggacCGCCc- -3'
miRNA:   3'- -UGGCCG--AGGUCGUCGa----CGGa----GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 84539 0.66 0.722815
Target:  5'- aGCCGGCgUCgGGCGGCgcggcgagGCgCUCgACCUc -3'
miRNA:   3'- -UGGCCG-AGgUCGUCGa-------CG-GAG-UGGAa -5'
8973 5' -61.3 NC_002512.2 + 102332 0.7 0.499604
Target:  5'- gGCCGGCUCCGGUacgacaAGCgcguCCUCgGCCUg -3'
miRNA:   3'- -UGGCCGAGGUCG------UCGac--GGAG-UGGAa -5'
8973 5' -61.3 NC_002512.2 + 104010 0.67 0.65473
Target:  5'- uCCGGUUCCAGCcG-UGCC-CGCCg- -3'
miRNA:   3'- uGGCCGAGGUCGuCgACGGaGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 107495 0.68 0.585793
Target:  5'- gACCGGC-CC-GCAGCgGUCUCugCg- -3'
miRNA:   3'- -UGGCCGaGGuCGUCGaCGGAGugGaa -5'
8973 5' -61.3 NC_002512.2 + 112793 0.68 0.585793
Target:  5'- uGCCGGgUCCAG-GGCgGCCcgCACCUc -3'
miRNA:   3'- -UGGCCgAGGUCgUCGaCGGa-GUGGAa -5'
8973 5' -61.3 NC_002512.2 + 113275 0.67 0.684166
Target:  5'- gGCCGGCggggcagCC-GCGGCggGCCUC-CCg- -3'
miRNA:   3'- -UGGCCGa------GGuCGUCGa-CGGAGuGGaa -5'
8973 5' -61.3 NC_002512.2 + 115777 0.7 0.49035
Target:  5'- gACCGGaUCCcGCAGC-GCCUgACCUa -3'
miRNA:   3'- -UGGCCgAGGuCGUCGaCGGAgUGGAa -5'
8973 5' -61.3 NC_002512.2 + 117588 0.67 0.634023
Target:  5'- cACCGGCaUCgAGCAGCUcugcguggauuacGCCcugCACCg- -3'
miRNA:   3'- -UGGCCG-AGgUCGUCGA-------------CGGa--GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 118912 0.66 0.722815
Target:  5'- cUCGGUccaCCGGCGGCUGCUcgUCAUCg- -3'
miRNA:   3'- uGGCCGa--GGUCGUCGACGG--AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 119582 0.68 0.61134
Target:  5'- cCCGGCggguccccucgcgCCAGCAGUgucGCCcUCGCCg- -3'
miRNA:   3'- uGGCCGa------------GGUCGUCGa--CGG-AGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.