miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8973 5' -61.3 NC_002512.2 + 199367 1.04 0.002475
Target:  5'- cACCGGCUCCAGCAGCUGCCUCACCUUc -3'
miRNA:   3'- -UGGCCGAGGUCGUCGACGGAGUGGAA- -5'
8973 5' -61.3 NC_002512.2 + 149882 0.76 0.205888
Target:  5'- uCCGGCUCCGGCugccGCUGCCUgGaCCUc -3'
miRNA:   3'- uGGCCGAGGUCGu---CGACGGAgU-GGAa -5'
8973 5' -61.3 NC_002512.2 + 193333 0.76 0.205888
Target:  5'- cCCGGCUCCAGCGGaacgGgCUCGCCa- -3'
miRNA:   3'- uGGCCGAGGUCGUCga--CgGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 169546 0.75 0.260256
Target:  5'- cCCGGCUgcCCGGCGGCgugGCCuUCGCCg- -3'
miRNA:   3'- uGGCCGA--GGUCGUCGa--CGG-AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 126521 0.74 0.285085
Target:  5'- -gCGGCUCCGGCGGcCUGaCCUCgACCg- -3'
miRNA:   3'- ugGCCGAGGUCGUC-GAC-GGAG-UGGaa -5'
8973 5' -61.3 NC_002512.2 + 209466 0.74 0.304232
Target:  5'- uUCGGCUCCGGCgaacaccGGCUGCUcgUCGCCg- -3'
miRNA:   3'- uGGCCGAGGUCG-------UCGACGG--AGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 129946 0.71 0.419499
Target:  5'- cACCGGCggCAGCAGCaGCCgaCGCCg- -3'
miRNA:   3'- -UGGCCGagGUCGUCGaCGGa-GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 190114 0.71 0.419499
Target:  5'- uCCGGCgcuuccaCGGCAGCUGCgugcugCUCGCCUg -3'
miRNA:   3'- uGGCCGag-----GUCGUCGACG------GAGUGGAa -5'
8973 5' -61.3 NC_002512.2 + 188774 0.7 0.463087
Target:  5'- -gCGGUUCCGGCGGCggcuccgGCCUCGgCg- -3'
miRNA:   3'- ugGCCGAGGUCGUCGa------CGGAGUgGaa -5'
8973 5' -61.3 NC_002512.2 + 225465 0.7 0.463087
Target:  5'- cGCCGGuCUaCCAGCAGCcGCCgUCgACCg- -3'
miRNA:   3'- -UGGCC-GA-GGUCGUCGaCGG-AG-UGGaa -5'
8973 5' -61.3 NC_002512.2 + 115777 0.7 0.49035
Target:  5'- gACCGGaUCCcGCAGC-GCCUgACCUa -3'
miRNA:   3'- -UGGCCgAGGuCGUCGaCGGAgUGGAa -5'
8973 5' -61.3 NC_002512.2 + 62143 0.7 0.49035
Target:  5'- cGCCGacGC-CCGGCAGCU-CCUCGCCc- -3'
miRNA:   3'- -UGGC--CGaGGUCGUCGAcGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 102332 0.7 0.499604
Target:  5'- gGCCGGCUCCGGUacgacaAGCgcguCCUCgGCCUg -3'
miRNA:   3'- -UGGCCGAGGUCG------UCGac--GGAG-UGGAa -5'
8973 5' -61.3 NC_002512.2 + 148854 0.69 0.537343
Target:  5'- uGCCGGaacgCCGGCuGCcGCCUcCGCCUg -3'
miRNA:   3'- -UGGCCga--GGUCGuCGaCGGA-GUGGAa -5'
8973 5' -61.3 NC_002512.2 + 73817 0.68 0.576017
Target:  5'- uGCCGGCgcCCGGCGuCgaugaGCCUCGCCg- -3'
miRNA:   3'- -UGGCCGa-GGUCGUcGa----CGGAGUGGaa -5'
8973 5' -61.3 NC_002512.2 + 81040 0.68 0.576017
Target:  5'- aGCCGGCguUCCGGCAGCggugcGCCcggacCGCCc- -3'
miRNA:   3'- -UGGCCG--AGGUCGUCGa----CGGa----GUGGaa -5'
8973 5' -61.3 NC_002512.2 + 217581 0.68 0.585793
Target:  5'- aGCCGG-UCCGGCGGCgccGCCUCGg--- -3'
miRNA:   3'- -UGGCCgAGGUCGUCGa--CGGAGUggaa -5'
8973 5' -61.3 NC_002512.2 + 107495 0.68 0.585793
Target:  5'- gACCGGC-CC-GCAGCgGUCUCugCg- -3'
miRNA:   3'- -UGGCCGaGGuCGUCGaCGGAGugGaa -5'
8973 5' -61.3 NC_002512.2 + 112793 0.68 0.585793
Target:  5'- uGCCGGgUCCAG-GGCgGCCcgCACCUc -3'
miRNA:   3'- -UGGCCgAGGUCgUCGaCGGa-GUGGAa -5'
8973 5' -61.3 NC_002512.2 + 119582 0.68 0.61134
Target:  5'- cCCGGCggguccccucgcgCCAGCAGUgucGCCcUCGCCg- -3'
miRNA:   3'- uGGCCGa------------GGUCGUCGa--CGG-AGUGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.