Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 126521 | 0.74 | 0.285085 |
Target: 5'- -gCGGCUCCGGCGGcCUGaCCUCgACCg- -3' miRNA: 3'- ugGCCGAGGUCGUC-GAC-GGAG-UGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 34970 | 0.67 | 0.644875 |
Target: 5'- gACCGGgUCCGGCuGg-GCCUCGCg-- -3' miRNA: 3'- -UGGCCgAGGUCGuCgaCGGAGUGgaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 30505 | 0.67 | 0.664569 |
Target: 5'- cACCGGUUCgugaaggugaGGCAGCUGCUggaGCCg- -3' miRNA: 3'- -UGGCCGAGg---------UCGUCGACGGag-UGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 45487 | 0.67 | 0.664569 |
Target: 5'- gGCCGaGCgccccCCGGCGGCgGCCaCGCCg- -3' miRNA: 3'- -UGGC-CGa----GGUCGUCGaCGGaGUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 137257 | 0.67 | 0.664569 |
Target: 5'- cCCGGCgCCGGCGGCcGCCgu-CCg- -3' miRNA: 3'- uGGCCGaGGUCGUCGaCGGaguGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 39750 | 0.66 | 0.693908 |
Target: 5'- cCCGGUgggCCAggcgagcagcacGCAGCUGCCguggaagCGCCg- -3' miRNA: 3'- uGGCCGa--GGU------------CGUCGACGGa------GUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 118912 | 0.66 | 0.722815 |
Target: 5'- cUCGGUccaCCGGCGGCUGCUcgUCAUCg- -3' miRNA: 3'- uGGCCGa--GGUCGUCGACGG--AGUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 84539 | 0.66 | 0.722815 |
Target: 5'- aGCCGGCgUCgGGCGGCgcggcgagGCgCUCgACCUc -3' miRNA: 3'- -UGGCCG-AGgUCGUCGa-------CG-GAG-UGGAa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 69526 | 0.66 | 0.732316 |
Target: 5'- gGCCGuGCga-GGCauugAGCUGCCUCAUCg- -3' miRNA: 3'- -UGGC-CGaggUCG----UCGACGGAGUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 49680 | 0.67 | 0.644875 |
Target: 5'- gGCCGGCagCCAGUgcaugucgaaCUGCUUCGCCUUc -3' miRNA: 3'- -UGGCCGa-GGUCGuc--------GACGGAGUGGAA- -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 80372 | 0.67 | 0.63501 |
Target: 5'- gGCCGGCccgcUCCGGCcGCgGCCUUuugACCa- -3' miRNA: 3'- -UGGCCG----AGGUCGuCGaCGGAG---UGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 62143 | 0.7 | 0.49035 |
Target: 5'- cGCCGacGC-CCGGCAGCU-CCUCGCCc- -3' miRNA: 3'- -UGGC--CGaGGUCGUCGAcGGAGUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 102332 | 0.7 | 0.499604 |
Target: 5'- gGCCGGCUCCGGUacgacaAGCgcguCCUCgGCCUg -3' miRNA: 3'- -UGGCCGAGGUCG------UCGac--GGAG-UGGAa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 73817 | 0.68 | 0.576017 |
Target: 5'- uGCCGGCgcCCGGCGuCgaugaGCCUCGCCg- -3' miRNA: 3'- -UGGCCGa-GGUCGUcGa----CGGAGUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 81040 | 0.68 | 0.576017 |
Target: 5'- aGCCGGCguUCCGGCAGCggugcGCCcggacCGCCc- -3' miRNA: 3'- -UGGCCG--AGGUCGUCGa----CGGa----GUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 112793 | 0.68 | 0.585793 |
Target: 5'- uGCCGGgUCCAG-GGCgGCCcgCACCUc -3' miRNA: 3'- -UGGCCgAGGUCgUCGaCGGa-GUGGAa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 107495 | 0.68 | 0.585793 |
Target: 5'- gACCGGC-CC-GCAGCgGUCUCugCg- -3' miRNA: 3'- -UGGCCGaGGuCGUCGaCGGAGugGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 117588 | 0.67 | 0.634023 |
Target: 5'- cACCGGCaUCgAGCAGCUcugcguggauuacGCCcugCACCg- -3' miRNA: 3'- -UGGCCG-AGgUCGUCGA-------------CGGa--GUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 124818 | 0.67 | 0.63501 |
Target: 5'- cGCCGGCUucuUCGGCuGCgUGCCggaCACCg- -3' miRNA: 3'- -UGGCCGA---GGUCGuCG-ACGGa--GUGGaa -5' |
|||||||
8973 | 5' | -61.3 | NC_002512.2 | + | 199367 | 1.04 | 0.002475 |
Target: 5'- cACCGGCUCCAGCAGCUGCCUCACCUUc -3' miRNA: 3'- -UGGCCGAGGUCGUCGACGGAGUGGAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home